Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10588 ATGGGGTCCCACCAAAGCATGAACCATATCAGTTTGGATATCCCCTTCCCTTCCATTTCCACTCTCTCTTATGCTCCCTTCCACATAATCTATCTCATGGCATTTGCCACTGCTCACAAGTGGCTCACAAACTTCATCGACACCAAATACAGAGCACCTCCTCTTTCAAAGAGACAACAACACCCCCAACAGCAAAACCCCTTCTATTTCATCCACCGCCACAGACCCATGTGTCAGGGATGTTACCTTTCAATGAACGGTTGTAGAGAAGGAGAACACCATGCAAGAAACCCTGTTGGCACCATAGAAACCCTCTCATTGGAACCTGTTGCATCACCTGCAATGGCTATGTACAGCCTCAACATGGCCATTTCAGAGCTGAAAACAGATCCTCCATTTTGTACTTCTTCTGGCATAGTGAGAGTGCAGGTGCCAATTGAAGACCAAGTTGAAGCCATTGATTGGCTTCATTCCCAAAGCCACCTTCTCCTTCCTCGTTGCTTTTTCTCTGGGAGGGAACAAAATCCCTGCAGTGGGAACTTGGTCAGCGTTGCTGGTGTGGGTTCAGCTGTTTTCTTTTCCCAGCCACATCCCTTTTCTTATTGGGATTGGATATCTATAAGGAGGTTTCTTTCCGAGAGATGCCCATTAATCCGTGCATATGGAGCTATCCGTTTCAATGCAAAAGCTAAGGTGTCATCAGAGTGGCTGGCTTTTGGCTCTTTCTACTTCATGATTCCTCAGGTTGAGTTTAATGAGCTTGAAGGAGGATCAATGCTTACCACAACTATTGCCTGGGATAATGCTCTTTCTTGGTCATGGGAAAATGCAATCAATGCACTCCAAACAACACTTTGCAAAGTTTCTTCTTCCATTGTGAAGTTTCCAAAACAAGCTCCTCCAACATTAATTTTAAGCAGCCATAACATTCCCAATAAAGTAGATTGGGATCTTGCTGTTAACAGAGCTTTGCAGATGATAGAGCGAAATGATTCCTTACTAAACAAGGTTGTACTAGCTCGTAGCACCAGAGTAATGCCTACTGCTGACATTGATCCTCTTACGTGGTTAGCTTGCTTAAAGGTTGAAGGTGAAAATGCTTACCAGTTTTTCCTTCAGCCACCTAATGCACCAGCATTTATTGGAAACACACCAGAGCAACTATTTCACAGAAAACGGCTCCACATTACTAGTGAGGCTTTGGCTGGAACCCGTGCTAGAGGAGTGTCACTAGCACTAGACCGTCAAATTGAACTTGACTTGCTTACCAGTCCAAAAGATGACATTGAGTTTACTATAGTGAGGGAGACCATAAGAAGAAAATTAGAGGCAGTATGTGAAAATGTTGTAATTGAGCCAAAGAAAATGATAAGAAAACTACCCAGGATCCAACATTTATTTGCTCAATTAGTTGGCAGGTTACGATGTGAAGAAGATGAGTTTGAAATTTTGTCGTCACTTCACCCAAGTCCAGCTGTTTGTGGGTTTCCAACAGAAGAGGCACAACGTTTAATTGCAGAAACAGGGGAATTGAATGTTTTATTGTGGCATAGGGTGAAGAGAGCAGATACAAGAGCTAGTTTAGAAAATTTGATGATAGTGAGATACAAGGTGAAGAGGATGTGGGATAATGCTAACGTAGATCATCCTAGAGTGGAATTTGTTCAAAAAGTATTTGATCGAGGGATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGGTGAGAGTGAGTTTGCCGTTGGCATCAGGTCAGCACTGGTGGAAAAGGATCTAGGCGCATTGATATATGCCGGAACAGGGATTGTGGAAGGAAGCAATCCTTACTTGGAGTGGGATGAGCTAGAACTCAAGACGTCTCAGGTCAGCATCGTCATCACCAACCTTCGCTTCGCATTCAAATCTCTTTCTCTCGCGCATTCCCGGAGACGCCGTCGTTTTGCTAACGCCGGTGCCTCCAACACCATCATCATGGCCGAGAAAGCGAAGCAACACCACCTGCACCGTGGCTTCGCCTTCTCGCTTCCCGTAAGCGTCGTCGTTTTAGGTATCGCCTACATTTACCTCTCCACCGTTTTCGTCTTCATCGACCGCTGGCTTGGCCTCTTCTCATCCCCAGGGATCGCAAACGCCGTCGTTTTCACCGCCATCGCCTCCATGTGCGTCTTCACCTACCGCGCCGCTATTTCCGCGGATCCTGGTCGGGTTCCCTCCACCTACATGCCCGACGTTGAAGACGCCGAAAGCCCCATCCACGAGATCAAGCGCAAGGGTGGAGATTTGCGATATTGCCAAAAGTGTTCTCACTATAAGCCTCCCCGTGCACATCATTGTCGGGTGTTGTCACTTGCTTGTAAGGATCACCATTGCATTTGGATAAATAACTGCGTTGGTCATGCAAACTACAAGGTCTTCTTCATTTTTGTTATGTATGCTGTAATTGCCTGCATCTACTCCCTGGTCTTACTTGTTGGTAGTCTAGCTTATGATGGTACACAGGATGAAGAGAAAAATGGCGGCTCTTTCAGAACTGTATATGTTGTTTCTGGGATCTTACTGGTCCCATTATCTATAGCGTTATGTGTGCTTTTAGGATGGCATATCTATCTCGTCCTACATAACAAGACCACGATAGAGTATCATGAAGGAGTGAGAGCTTTGTGGCTTGCAGAGAAGGGTGGGAGTATATATAAACATCCATATGACCTTGGCCCGTATGAGAACTTGACATCTGTTTTGGGACCAAATATCCTTAGCTGGCTGTGGCCTACAGCAAACCATATAGGTTCTGGACTTAGGTTCCGCACCGTCTATGATCTTACACAAGGTGCATCGGCATCCAAATGA 2844 0.4553 MGSHQSMNHISLDIPFPSISTLSYAPFHIIYLMAFATAHKWLTNFIDTKYRAPPLSKRQQHPQQQNPFYFIHRHRPMCQGCYLSMNGCREGEHHARNPVGTIETLSLEPVASPAMAMYSLNMAISELKTDPPFCTSSGIVRVQVPIEDQVEAIDWLHSQSHLLLPRCFFSGREQNPCSGNLVSVAGVGSAVFFSQPHPFSYWDWISIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFNELEGGSMLTTTIAWDNALSWSWENAINALQTTLCKVSSSIVKFPKQAPPTLILSSHNIPNKVDWDLAVNRALQMIERNDSLLNKVVLARSTRVMPTADIDPLTWLACLKVEGENAYQFFLQPPNAPAFIGNTPEQLFHRKRLHITSEALAGTRARGVSLALDRQIELDLLTSPKDDIEFTIVRETIRRKLEAVCENVVIEPKKMIRKLPRIQHLFAQLVGRLRCEEDEFEILSSLHPSPAVCGFPTEEAQRLIAETGELNVLLWHRVKRADTRASLENLMIVRYKVKRMWDNANVDHPRVEFVQKVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKDLGALIYAGTGIVEGSNPYLEWDELELKTSQVSIVITNLRFAFKSLSLAHSRRRRRFANAGASNTIIMAEKAKQHHLHRGFAFSLPVSVVVLGIAYIYLSTVFVFIDRWLGLFSSPGIANAVVFTAIASMCVFTYRAAISADPGRVPSTYMPDVEDAESPIHEIKRKGGDLRYCQKCSHYKPPRAHHCRVLSLACKDHHCIWINNCVGHANYKVFFIFVMYAVIACIYSLVLLVGSLAYDGTQDEEKNGGSFRTVYVVSGILLVPLSIALCVLLGWHIYLVLHNKTTIEYHEGVRALWLAEKGGSIYKHPYDLGPYENLTSVLGPNILSWLWPTANHIGSGLRFRTVYDLTQGASASK. 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10588 947 Gene3D Anthranilate synthase 117 625 IPR005801 GO:0009058
Seca4g10588 947 Pfam chorismate binding enzyme 315 508 IPR015890 -
Seca4g10588 947 Pfam chorismate binding enzyme 559 617 IPR015890 -
Seca4g10588 947 ProSiteProfiles DHHC domain profile. 761 809 - -
Seca4g10588 947 SUPERFAMILY ADC synthase 148 507 IPR005801 GO:0009058
Seca4g10588 947 SUPERFAMILY ADC synthase 523 620 IPR005801 GO:0009058
Seca4g10588 947 Pfam DHHC palmitoyltransferase 759 880 IPR001594 GO:0016409
Seca4g10588 947 NCBIfam isochorismate synthase 219 508 IPR004561 GO:0008909|GO:0009058
Seca4g10588 947 PANTHER - 78 508 IPR044250 GO:0008909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10588 Seca-Chr4 242155804 242170963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10588 719 922 Lipid Metabolism Gene Families AT4G22750 33.641 3.74e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10588 K02552 - gmx:100804974 886.33