Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0542 ATGAAGAATGAGGATCAGATCACACAACAGGCTCAGAGACCAAAATATGATTGCCTTCTATTTGATTTAGATGATACTTTGTATCCTCTCAATTCTGGTCTTGCAAATGCAATTGACAAAAATATTAAAGACTACATGGTCGAGAAGCTTGGCGCAGAACCAAGTAAAACTGGTGAATTGGTCAACCTCCTTTACAGTAACTATGGAACTACTATTGCTGGTCTAAGGGTATCATTTCCTTCTATTGGGTATGACATTGACTATGAAGAATATTACAGTTTTGTTCATGGGAAATTACCTTATGAGAACTTAAAGCCAGACCCAGTTCTGAGGAATCTGCTGCTGAGTCTCCCCTATAGAAAGCTTATTTTCACAAACTCAGACAAAGTCCACACGATTAAGGCACTTGAAAGACTTGGGTTGGAAGACTGCTTTGAAGGAATAATATGCTTTGAGACCCTTAATCCTATCCAAAAGAGCACTGTTTTTTATTATGAAGATGACGTAAAGTTTGAGGGTTCAAAGAGCATAAGTCCAACACCCAAAAATGGTGTAGAAAGCTCTGAAATCTTTGACATCATAGAGCATTTTGCTCAACCTGTACCCAGTGCAGTCCTGCCAGAGACACCAATTATCTGCAAACCATCAGGACATGCCATTAAATTGGCCCTCAAGATGGCCAACCTTAACCCACAAAGAACCTTGTTCTTTGAGGATAGTGTCCGCAACATACAATCTGGAAAACGATTGGGCCTTCACACTGTGCTGGTTGGTAGATCCTACAGGGTTAAAGGTGCTGATTATGCCATGGAAAGCATTCACAACCTTAAGGAGGCAGTGCCTGAACTGTGGGACGCTGACATAAAAGCACAAGTTGAATGCCCGGGAACTGAGAAGCTTGCAGTGGAGACATCAGATATAGTTTGA 927 0.4121 MKNEDQITQQAQRPKYDCLLFDLDDTLYPLNSGLANAIDKNIKDYMVEKLGAEPSKTGELVNLLYSNYGTTIAGLRVSFPSIGYDIDYEEYYSFVHGKLPYENLKPDPVLRNLLLSLPYRKLIFTNSDKVHTIKALERLGLEDCFEGIICFETLNPIQKSTVFYYEDDVKFEGSKSISPTPKNGVESSEIFDIIEHFAQPVPSAVLPETPIICKPSGHAIKLALKMANLNPQRTLFFEDSVRNIQSGKRLGLHTVLVGRSYRVKGADYAMESIHNLKEAVPELWDADIKAQVECPGTEKLAVETSDIV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0542 308 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 17 257 IPR010237 -
Gso3g0542 308 SFLD Haloacid Dehalogenase 10 285 - -
Gso3g0542 308 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 1 306 - -
Gso3g0542 308 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 306 - -
Gso3g0542 308 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 212 257 IPR006439 -
Gso3g0542 308 SUPERFAMILY HAD-like 14 283 IPR036412 -
Gso3g0542 308 Pfam Haloacid dehalogenase-like hydrolase 213 257 IPR041492 -
Gso3g0542 308 Gene3D - 84 284 IPR023214 -
Gso3g0542 308 SFLD C1.5.3: 5'-Nucleotidase Like 10 285 IPR010237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0542 Gso-Chr3 12678181 12682181 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0542 K07025 - gmx:100790020 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1479 18 43740248 43743580 Gso3g0542 3 12678181 12682181 PCT
Gso7g1138 7 15846719 15850182 Gso3g0542 3 12678181 12682181 PCT
Gso3g0542 3 12678181 12682181 Gso18g1479 18 43740248 43743580 PCT
Gso3g0542 3 12678181 12682181 Gso7g1138 7 15846719 15850182 PCT