Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00018 ATGGAGTACGAGGACCGGTTCAGAAACCAGGTTCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTGGATGATACTTTGTATCCTCTCAGATCTGGTCTTGCAAAAGCATGTCTCCAAAATATTAAAGATTATATGGTGGAGAAGCTTGGCATAGAACCAAGCAAAATTGATGACTTGTCCAACCTTCTTTACAAGAACTATGGAACAACTATGGCTGGTCTAAGGGCAATTGGGTATGACTTTGACTATGATGAATATCACAGTTTTGTTCATGGGAGATTACCTTATGAGAACTTAAAACCAGACCCAGTTTTGAGGAACCTGTTGCTGAGCCTGCCCTATAGGAAACTTATCTTCACAAACGCAGACAAAGTCCATGCCGTTAAGGCACTTAACAGGCTTGGATTAGAAGACTGCTTTGAAGGAATTATTTGCTTTGAGACCCTTAATCCCATCCACAAGAGCAATGTTTCTGATGATGAAGATGATATTGAGTTTGTGGGTTCAAGAAGCTCCAATCCAACCACAAGTAATGGTGCAAGCAGCTCTCAAATCTTTGACATCATAGAGCATTTTGCTCAGCCTGATCCCAGTACTGCAGTCTTGCCAAAGACACCAATTATCTGCAAACCATCAGAAAATGCCATTGAATCGGCTCTCAAAATAGCCAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGACAGTGTCCGTAACATACAAGCTGGAAAACGTGCGGGACTTCACACTGTGCTGGTTGGTACATCCCAGAGAGTTAAAGGTGCTGACTATGCATTGGAAAGCATTCACAACCTTAGAGAGGCAGTGCCTGAACTTTGGGAAGCTGAAATAAAATCAGAAGTTGCATACCCTGGGAAGCTAGCTGTGGAGACATCAGTCACAGCTTGA 912 0.4221 MEYEDRFRNQVQRPKYDCLLFDLDDTLYPLRSGLAKACLQNIKDYMVEKLGIEPSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHAVKALNRLGLEDCFEGIICFETLNPIHKSNVSDDEDDIEFVGSRSSNPTTSNGASSSQIFDIIEHFAQPDPSTAVLPKTPIICKPSENAIESALKIANLNPQRTLFFEDSVRNIQAGKRAGLHTVLVGTSQRVKGADYALESIHNLREAVPELWEAEIKSEVAYPGKLAVETSVTA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00018 303 NCBIfam pyrimidine 5'-nucleotidase 17 254 IPR010237 -
Rops4g00018 303 NCBIfam HAD-IA family hydrolase 209 254 IPR006439 -
Rops4g00018 303 SUPERFAMILY HAD-like 15 281 IPR036412 -
Rops4g00018 303 CDD HAD_5NT 18 256 IPR010237 -
Rops4g00018 303 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 2 302 - -
Rops4g00018 303 Pfam Haloacid dehalogenase-like hydrolase 211 254 IPR041492 -
Rops4g00018 303 SFLD C1.5.3: 5'-Nucleotidase Like 11 283 IPR010237 -
Rops4g00018 303 Gene3D - 82 281 IPR023214 -
Rops4g00018 303 SFLD Haloacid Dehalogenase 11 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00018 Rops-Chr4 565803 568905 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00018 K07025 - gmx:100796466 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01728 8 38721302 38723130 Rops4g00018 4 565803 568905 PCT