Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2169 ATGCGATCTGGAATTTCATTAGAGGTTAAAGATTCGGATGCTCAATTTCAAGTAAATGGGAAAATGAAAGTGAAATTCATGGTGCACGAACAAGCCTTGCCTATCTTTGTTTGTTCCCTTTTTGGTTTTGAAATGGAGTTCGGGGACCGCTTCAGACAACAGGCTCAGAGACCAAAACATGATTGCCTTCTTTTTGATTTAGATGACACTTTGTATCCCCTCAGATCTGGTCTTGCAAAAGCATGTCTCCAAAATATTAAAGACTACATGGTTGAGAAGCTTGGCATAGACCCAAGCAAAATTGATGACTTGTCCAACCTCCTTTACAAGAATTATGGAACAACTATGGCTGGTCTAAGGgCAATTGGATATGACTTTGACTATGATGAATATCACAGTTTCGTTCATGGGAGATTACCTTACGAGAACCTAAAACCAGACCCAGTTCTGAGGAACCTGTTGCTGAGCCTGCCCTATAGGAAACTTATCTTCACAAACGCAGACAAAGTCCACGCTTCTAAGGCACTTAACAGGCTTGGATTGGAAGACTGCTTTGAGGGAATTATATGCTTTGAGACCCTTAATCCCATCCACAAGAGCACTGtttctgatgatgaagatgacatTGAGTTTGTGGGTTCAAGGAGCACCAATCCACGCACTAGCAATGGTTCAGGCACCTCTCAAATCTTTGACATCATAGAGCATTTTGCTCAGCCCAATCCCAGTGCAGCTTTGCCAAAGACACCAGTTATTTGCAAACCATCAGAAAATGCCACAGAATTGGCCCTCAAGATAGCCAACCTTAACCCACAAAGAACTGTAAGAAAATCACCCTTTAGGCTTTGGGATGATGTTAGGCTAAAATACAGTTTTGCTCTCTCATCTTATTTTTGGTTGCAGTTttgtcttttaagtttaaaaagttttattttaatctcttaa 945 0.3915 MRSGISLEVKDSDAQFQVNGKMKVKFMVHEQALPIFVCSLFGFEMEFGDRFRQQAQRPKHDCLLFDLDDTLYPLRSGLAKACLQNIKDYMVEKLGIDPSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHASKALNRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGSRSTNPRTSNGSGTSQIFDIIEHFAQPNPSAALPKTPVICKPSENATELALKIANLNPQRTVRKSPFRLWDDVRLKYSFALSSYFWLQFCLLSLKSFILIS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2169 314 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 61 275 IPR010237 -
Ssu4g2169 314 Gene3D - 52 144 - -
Ssu4g2169 314 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 45 275 - -
Ssu4g2169 314 SUPERFAMILY HAD-like 62 275 IPR036412 -
Ssu4g2169 314 Gene3D - 145 276 IPR023214 -
Ssu4g2169 314 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 45 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2169 Ssu-Chr4 49748956 49753496 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2169 K07025 - gmx:100796466 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2169 4 49748956 49753496 Ssu4g2169 4 49748956 49753496 ECH
Ssu3g1293 3 31845218 31846991 Ssu4g2169 4 49748956 49753496 PCT