Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01689 AGTTCCATTGCCCATAATTATTCAATTTCAAAGCTAAACGTAATTGAAGAAAATAATGCAATATTATATTCAAAGACCCTGCCACAGAAGCAACCCTTTCTCTATATAAACTCCATCTTGCCTCTATTGTTCCTCCCCCTTCTCCCTCTTGCTTCCTTCCATAACTTTGCATTTGTTCAAACTTTGCTTCTTCACACCCTCTTTTTCTTTGGCCTTACCCCTCATTGTTCCCTTTTTGGCTTTGAAATGGAATTCGAGGACCGCTTCAGACACCAAGCTCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCCCTCAGATCTGGTCTTGCAAAAGCATGTCTCCAAAATATTAAAGACTACATGGTTGAGAAGCTTGGCATAGACCCTAGCAAAATTGATGACTTGTCCAACCTCCTTTACAAGAACTATGGAACAACCATGGCTGGTCTAAGGGCAATTGGATATGACTTTGACTATGATGAGTATCACAGTTTTGTTCATGGGAGGTTACCATATGAGAACCTAAAACCAGACCCAGTTCTGAGGAACCTATTGCTGAGCCTGCCCTATAGGAAACTTATCTTCACAAATGCAGACAAAGTCCACGCTGCTAAGGCACTTAACAGGCTTGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAGAGCACTGTTTCTGATGATGAAGATGACATTGAATTTGTGGGTTCAAGGAGCACCATTACAACTAGTAGTAATGGTTCAGGCACCACTCAACTCTTTGACATCATAGAGCATTTTGCTCAGCCCAATCCCAGTGCAGATTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAATTGGCCCTCAAAATAGCCAGCCTTAACCCACAAAGAACTTTGTTCTTTGAGGACAGTACCCGCAACATACAAGCTGGAAAACGTGTGGGGCTTCACACTGTGCTGGTTGGTACATCCCAAAGATGTAAAGGTGCAGATTATGCCTTGGAAAGCATTCACAACCTTAGGGAGGCTGTGCCTGAACTATGGGAGGCTGATATAAAATCAGAAGTTGCATACCCTGGAAAGCTATCAGTGGAGACATCTGTCACAGCTTGA 1155 0.4199 SSIAHNYSISKLNVIEENNAILYSKTLPQKQPFLYINSILPLLFLPLLPLASFHNFAFVQTLLLHTLFFFGLTPHCSLFGFEMEFEDRFRHQAQRPKYDCLLFDLDDTLYPLRSGLAKACLQNIKDYMVEKLGIDPSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHAAKALNRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVGSRSTITTSSNGSGTTQLFDIIEHFAQPNPSADLPKTPIICKPSENAIELALKIASLNPQRTLFFEDSTRNIQAGKRVGLHTVLVGTSQRCKGADYALESIHNLREAVPELWEADIKSEVAYPGKLSVETSVTA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01689 384 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 290 335 IPR006439 -
Cca01g01689 384 SFLD C1.5.3: 5'-Nucleotidase Like 92 364 IPR010237 -
Cca01g01689 384 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 83 384 - -
Cca01g01689 384 Pfam Haloacid dehalogenase-like hydrolase 270 335 IPR041492 -
Cca01g01689 384 SUPERFAMILY HAD-like 97 362 IPR036412 -
Cca01g01689 384 CDD HAD_5NT 100 337 IPR010237 -
Cca01g01689 384 Gene3D - 164 362 IPR023214 -
Cca01g01689 384 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 99 335 IPR010237 -
Cca01g01689 384 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 83 384 - -
Cca01g01689 384 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 92 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01689 Cca-Chr1 38775258 38778786 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01689 K07025 - gmx:100796466 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01689 01 38775258 38778786 Cca01g01689 01 38775258 38778786 ECH
Cca07g01408 07 37028433 37031396 Cca01g01689 01 38775258 38778786 PCT