Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2179 ATGTTGGATTTGCCCATCGGTGAAAGAGTAAAATTAAAGACAACGGCCGCGTCTGGATTTATCTTAGAAGCTAGAACCCACCCAGGTCAGCTGTTCTCGTATCATAATCATCACCAACCAACGAACCAACCTCCTGATTCAAAGCGCCCTCTCTCGCGCATTCCCGGAGACGCCGTCGTTTTGGCAGCGCCGGCGCCTCCGCCTCGCCCCATGGCCGCCGACAAAGCGAAGCCCTCCACCACGTTCTCGCTCCCCGTGAGCGTCGTCGTTTTGGGCATCGCCTACATTTACGTCTCCACCGTGTTCGTCTTCATCGACCGTTGGCTCGGCCTCTTCTCCTCCCCCGGGATCATGAACGCCGTTGTTTTCACCGCCCTCGCCTCCGTCTGCGTCTCCACCTACCGCGCCGCCATTTCCGCGGATCCGGGTCGGGTCCCCTCCACCTACGTGCCCGACGTCGAAGACGTCGAGAGCCCCATCCACGAGATCAAACGCAAGGGTGGAGATTTGCGATATTGCCAAAAGTGTTCTCACTATAAGCCTCCCCGTGCACATCATTGCCGGGTTTGTAAAAGATGTGTTCTACGAATGGATCATCATTGTATTTGGATAAATAACTGCGTCGGTCATGCAAACTATAAAGTCTTcttcatttttgtcttatatgcTGTAATTTCCTGCATCTACTCCCTGGTCTTACTTGTGGGTAGTCTAGCTTATGATGGCATACAGGATGAAGAGAAAAATGGAAGAAGCTCTTTCCGAACTGTATATGTTGTTTCTGTGCTCTTGCTGGTCCCCTTAACCATAGCATTATGTGTGCTTTTAGGGTGGCATATCTATCTCATCTTACATAACAAGACCACGATAGAGTATCATGAAGGAGTGAGAGCTTTGTGGCTTGCAGAGAAAGGTGGGAGTATCTATAAACATCCATATGACCTTGGCCCGTATGAGAATTTGACATCTGTTTTGGGACCAAATATACTTAGCTGGCTGTGGCCTACAGCAAACCATATAGATTCTGGACTTAAGTTCCGCACCACCTATGGTCTCCCACAAGGTGGTCACGAGCTGTTTGCTGCATATACTTGA 1095 0.495 MLDLPIGERVKLKTTAASGFILEARTHPGQLFSYHNHHQPTNQPPDSKRPLSRIPGDAVVLAAPAPPPRPMAADKAKPSTTFSLPVSVVVLGIAYIYVSTVFVFIDRWLGLFSSPGIMNAVVFTALASVCVSTYRAAISADPGRVPSTYVPDVEDVESPIHEIKRKGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFIFVLYAVISCIYSLVLLVGSLAYDGIQDEEKNGRSSFRTVYVVSVLLLVPLTIALCVLLGWHIYLILHNKTTIEYHEGVRALWLAEKGGSIYKHPYDLGPYENLTSVLGPNILSWLWPTANHIDSGLKFRTTYGLPQGGHELFAAYT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2179 364 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 81 353 - -
Ssu4g2179 364 PANTHER PROTEIN S-ACYLTRANSFERASE 16-RELATED 81 353 - -
Ssu4g2179 364 MobiDBLite consensus disorder prediction 32 48 - -
Ssu4g2179 364 ProSiteProfiles DHHC domain profile. 171 221 - -
Ssu4g2179 364 MobiDBLite consensus disorder prediction 32 51 - -
Ssu4g2179 364 Pfam DHHC palmitoyltransferase 169 293 IPR001594 GO:0016409
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2179 Ssu-Chr4 50102455 50110364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2179 133 341 Lipid Metabolism Gene Families AT4G22750 33.486 2.22e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2179 K20029 - gmx:100798478 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2179 4 50102455 50110364 Ssu4g2179 4 50102455 50110364 ECH