Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0515 ATGGCTCTGAGGTATCGCCTTACGAAGGAACTCTCGAAGTTTCTAACACCCGTTCTTCACGCAGGTGACTGCTGTCAGCAATCTGGCAAAACTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAAGCCAGTTGCTAATTGGACTCAAGTGAGAGGGTTTCGTGAACACAGGATCTCAACAAAGGCTGATAAATTGCTTGAACCGGCCACTGAAATTGATCTTTTGTCTTTCATCAAGGCTTCACTGGATGAGTTTGAAgGCACCCATCATTATTGGTTAAATAGATCTGACAAAAATGACCAACTTTGTGGAGCTGATggaatatttttagttcttgctGCAAGGATTTTCGACTGTGGCATTACGCTTGAAAAATTGAAGACAATTCAAAAGAGGTTCCCTCATATTAATATTATGGGTTTGCAAGCAATTCACTCTTCTTCTGTTCAAGTGCACCTAATCCAGTTACTGATGACAGAAAATATAACATTCCCCATTTTGTTGTCTCAGCAGACATTTCCTAAGATAGAGAAAGGTGCATGCTacatattgtttaaaaattttaggagCCCGGTGATTTATCATGAGAAGAACGCAGGTCTTGAAATTCTAAGCCAAGCTGTTCAAGAGTTACAGGAGCAACCAGGTGGTGATTCTAAGTCACTCAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATCAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGTGTCTCCACTGATGAAAGTGATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGATGCAAATGGAGAGATTCTGGACTGTATTGGTTCTTCTCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCTTATTACCATGCTACTGAGAATTGCTTATATTTTGTGGATTCAGAGAACCATGCTATCAGGAAAGCTGACATGGGGGCGCGAACAGTGGCAACTCTCTATCCTACAAGCCCATCTAACAAGGGAGGTACTCACATATGGAATTGGGTCATGAATAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAATGTTGAGGAAAGATCTGAAGTATTTGATTCTAAATCGTTATATTTCCCATGGCATTTGCTGAAATCAGTTGATCACACTCTCTACATTATAGACCGAAGCTTTCAAACTTTGTGGATCATGGATATCAAGTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCTCCCAGAATTATTGAGATCTGTGGACAGCCAATCATGAAAAGTTTATCCATCATAGATCAGATTCCCTGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGCCCTACCACATTCTGATCTTTTATCTTCACTGGCAACCTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATGGAGAATCTGGGGTCTGTTCAAACTTCAGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTGTGCTGTTGGAAATGGACTTTCGGGTACACGAATTGATCATCAGCAACATTTTGATTTGCTACCAGGTTATTTTACAttgtaa 1674 0.3907 MALRYRLTKELSKFLTPVLHAGDCCQQSGKTLNLVALSIMHMPSAQKPVANWTQVRGFREHRISTKADKLLEPATEIDLLSFIKASLDEFEGTHHYWLNRSDKNDQLCGADGIFLVLAARIFDCGITLEKLKTIQKRFPHINIMGLQAIHSSSVQVHLIQLLMTENITFPILLSQQTFPKIEKGACYILFKNFRSPVIYHEKNAGLEILSQAVQELQEQPGGDSKSLNVVRCTSLKQDGIIKDQCSFSPLQNLLLYYPGCVSTDESDNRLFFSDCNHHRILVSDANGEILDCIGSSPGFEDGDFESAKLRRPAGSYYHATENCLYFVDSENHAIRKADMGARTVATLYPTSPSNKGGTHIWNWVMNKLGLESSGKTNVEERSEVFDSKSLYFPWHLLKSVDHTLYIIDRSFQTLWIMDIKSGKIDEVFEGSPRIIEICGQPIMKSLSIIDQIPCDWFQQQTKNGFLLGALPHSDLLSSLATLHNHIFICDPVGQRILKVNGESGVCSNFRLSNLGILGLPYWLNFPLETFCAVGNGLSGTRIDHQQHFDLLPGYFTL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0515 557 SUPERFAMILY YWTD domain 251 504 - -
Ssu2g0515 557 Coils Coil 199 219 - -
Ssu2g0515 557 PANTHER E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED 13 552 - -
Ssu2g0515 557 Gene3D - 232 340 IPR011042 -
Ssu2g0515 557 PANTHER NHL DOMAIN-CONTAINING PROTEIN 13 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0515 Ssu-Chr2 30216579 30248370 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0515 - - gmx:100806465 1003.43