Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2118 . . . . . . . . . . . Apr1g2642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02450 . . . . . . . Ssu1g1900 . . . . . . Vimu10g00770 . . .
Pvu9g2119 . . . . . . . . . . . Apr1g2640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00769 . . .
Pvu9g2120 . . . Aed10g1323 . . . . . . . . . . . . . . . . . . . . . . . . Lal4g1313 . . . . . . . . . . . . . . . . Phco7g02451 . . . . . . . . . . . . . . . . . Vra2g1622
Pvu9g2121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2122 . . . . Aev04g2244 . . . . . . . Arst4g00761 . . . . Cca03g00829 . . . . . . . . . . Lal4g1314 . Lan14g0273 . . Lasa1g04307 . . . . . Mal4g2417 . . . Mtr2g1972 . Phco7g02452 . Psa1g0553 . . Rops10g02200 Seca6g01091 . Ssu1g1898 . Tpr5g2837 . . . . Vimu10g00767 . Vivi4g01474 Vra2g1623
Pvu9g2123 . . . . . . . . . . . Apr1g2638 . . . . . Cca03g00826 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02453 . . . . . Seca6g01332 . Ssu1g1888 . . . . Vian4g00564 . Vimu10g00766 . . Vra2g1624
Pvu9g2124 . . . Aed4g1209 . . . . . . . . . . . . . Cca03g00824 . . . . Gma15g01996 Gma09g00941 Gso15g1748 Gso9g0833 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g1887 . . . . . . Vimu10g00764 Viun9g00778 . Vra2g1625
Pvu9g2125 . . Adu03g02493 . Aev04g2239 Ahy13g2576 Ahy3g2255 Aip03g02903 . Amo13g3116 Amo03g2059 Apr1g2635 Arst3g03340 Bach2g01611 . Bva06g00738 . . . . . . . . . . Lal17g1287 . Lal4g1320 Lan15g0302 Lan14g0269 . . Lasa1g04308 . . . . . Mal4g2418 . . . . . Phco7g02460 . Psa1g0551 . . . . . . . Tpr5g0532 . . . . Vimu10g00761 . Vivi4g01472 Vra2g1627
Pvu9g2126 Acco13g1147 Accr12g01109 . Aed10g1319 . . . . Alju13g1025 . . . . Bach2g01628 Bisa02g0229 Bva06g00753 . . Dere14g1342 . Enph5g0898 . . . . . . . . . . . . Lasa1g04317 Lele17g0604 Lele18g0907 Lele19g0942 Lele20g0508 . Mal4g2426 . . Mibi13g1087 . . Phco7g02461 Prci9g1002 . . . . . . . Sto12g1310 . . . . . Vimu10g00760 . . .
Pvu9g2127 . . . Aed10g1317 . . . . . . . Apr1g2633 . . . . . . . . . . . Gma06g02031 . . . . Lal4g1331 . . . . . . . . . . . . . . . . . . Psa1g0546 . . . . . . . Tpr5g0526 . . . . . . . Vra5g0369
   
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Select Species Gene Chromosome Start End Strand
Arst Arst4g00761 Chr4 6034333 6038227 +
Pvu Pvu9g2118 Chr9 30346591 30348674 -
Apr Apr1g2642 Chr1 35762000 35763679 +
Phco Phco7g02450 Chr7 42717107 42718381 -
Ssu Ssu1g1900 Chr1 51781718 51782844 -
Vimu Vimu10g00770 Chr10 6765678 6766964 +
Pvu Pvu9g2119 Chr9 30360937 30362749 -
Apr Apr1g2640 Chr1 35745962 35747526 +
Vimu Vimu10g00769 Chr10 6757763 6759901 +
Pvu Pvu9g2120 Chr9 30384797 30387621 -
Aed Aed10g1323 Chr10 15129953 15130330 +
Lal Lal4g1313 Chr4 17210718 17215176 +
Phco Phco7g02451 Chr7 42724453 42727959 -
Vra Vra2g1622 Chr2 24290521 24292554 -
Pvu Pvu9g2121 Chr9 30393092 30393403 -
Pvu Pvu9g2122 Chr9 30399852 30416317 -
Aev Aev04g2244 Chr04 21298303 21327172 -
Arst Arst4g00761 Chr4 6034333 6038227 +
Cca Cca03g00829 Chr03 19155983 19186151 +
Lal Lal4g1314 Chr4 17225974 17233940 -
Lan Lan14g0273 Chr14 3928897 3936428 -
Lasa Lasa1g04307 Chr1 724510474 724518651 +
Mal Mal4g2417 Chr4 61913464 61934724 +
Mtr Mtr2g1972 Chr2 27118510 27123893 +
Phco Phco7g02452 Chr7 42733298 42750378 -
Psa Psa1g0553 Chr1 33257978 33268659 -
Rops Rops10g02200 Chr10 39529909 39534123 -
Seca Seca6g01091 Chr6 41654488 41672218 -
Ssu Ssu1g1898 Chr1 51136516 51210992 -
Tpr Tpr5g2837 Chr5 51543759 51550565 +
Vimu Vimu10g00767 Chr10 6735890 6751546 +
Vivi Vivi4g01474 Chr4 55827072 55833615 -
Vra Vra2g1623 Chr2 24296520 24310917 -
Pvu Pvu9g2123 Chr9 30421213 30429547 -
Apr Apr1g2638 Chr1 35729279 35735362 +
Cca Cca03g00826 Chr03 19078377 19084643 +
Phco Phco7g02453 Chr7 42766993 42781390 -
Seca Seca6g01332 Chr6 59551070 59563951 -
Ssu Ssu1g1888 Chr1 50088609 50096115 +
Vian Vian4g00564 Chr4 6710809 6713156 +
Vimu Vimu10g00766 Chr10 6726329 6733905 +
Vra Vra2g1624 Chr2 24312243 24318623 -
Pvu Pvu9g2124 Chr9 30440458 30444639 +
Aed Aed4g1209 Chr4 11978108 11983107 +
Cca Cca03g00824 Chr03 18974787 18978201 +
Gma Gma15g01996 Chr15 33275572 33279444 +
Gma Gma09g00941 Chr09 17962392 17966578 +
Gso Gso15g1748 Chr15 32780452 32784450 +
Gso Gso9g0833 Chr9 17255561 17259439 +
Ssu Ssu1g1887 Chr1 50003420 50006611 +
Vimu Vimu10g00764 Chr10 6695139 6698282 -
Viun Viun9g00778 Chr9 5788362 5792528 -
Vra Vra2g1625 Chr2 24330983 24335104 +
Pvu Pvu9g2125 Chr9 30449184 30454033 +
Adu Adu03g02493 Chr03 77413305 77418603 +
Aev Aev04g2239 Chr04 21213417 21219805 +
Ahy Ahy13g2576 Chr13 86707804 86713950 -
Ahy Ahy3g2255 Chr3 79315799 79321760 +
Aip Aip03g02903 Chr03 80285186 80291308 -
Amo Amo13g3116 Chr13 91120138 91126289 -
Amo Amo03g2059 Chr03 75253142 75259241 -
Apr Apr1g2635 Chr1 35700740 35705948 -
Arst Arst3g03340 Chr3 76374563 76380416 +
Bach Bach2g01611 Chr2 24852414 24855833 +
Bva Bva06g00738 Chr06 6932748 6937026 +
Lal Lal17g1287 Chr17 14122523 14135200 -
Lal Lal4g1320 Chr4 17308062 17323340 -
Lan Lan15g0302 Chr15 3986679 3999061 -
Lan Lan14g0269 Chr14 3794278 3804720 +
Lasa Lasa1g04308 Chr1 724541270 724547307 -
Mal Mal4g2418 Chr4 61938924 61943231 -
Phco Phco7g02460 Chr7 43225077 43237399 +
Psa Psa1g0551 Chr1 33233519 33239922 +
Tpr Tpr5g0532 Chr5 7897239 7907917 +
Vimu Vimu10g00761 Chr10 6672766 6684921 -
Vivi Vivi4g01472 Chr4 55805378 55814352 +
Vra Vra2g1627 Chr2 24341371 24345988 +
Pvu Pvu9g2126 Chr9 30467863 30473795 -
Acco Acco13g1147 Chr13 9473903 9478731 +
Accr Accr12g01109 Chr12 11826230 11830929 +
Aed Aed10g1319 Chr10 14785968 14792312 +
Alju Alju13g1025 Chr13 28961112 28966116 -
Bach Bach2g01628 Chr2 24980420 24986273 -
Bisa Bisa02g0229 Chr02 4128317 4144928 +
Bva Bva06g00753 Chr06 7015414 7022066 -
Dere Dere14g1342 Chr14 13549251 13558841 +
Enph Enph5g0898 Chr5 7454755 7462686 +
Lasa Lasa1g04317 Chr1 725048893 725057245 -
Lele Lele17g0604 Chr17 18144391 18150452 -
Lele Lele18g0907 Chr18 5778894 5798045 +
Lele Lele19g0942 Chr19 5765730 5774369 +
Lele Lele20g0508 Chr20 12748527 12753273 -
Mal Mal4g2426 Chr4 62358040 62376727 -
Mibi Mibi13g1087 Chr13 13941738 13947904 +
Phco Phco7g02461 Chr7 43240711 43261763 -
Prci Prci9g1002 Chr9 24717103 24723353 -
Sto Sto12g1310 Chr12 8515900 8521482 +
Vimu Vimu10g00760 Chr10 6652515 6669141 +
Pvu Pvu9g2127 Chr9 30485496 30492678 -
Aed Aed10g1317 Chr10 14751277 14759009 +
Apr Apr1g2633 Chr1 35685948 35697734 +
Gma Gma06g02031 Chr06 29543772 29567716 -
Lal Lal4g1331 Chr4 17400649 17409108 -
Psa Psa1g0546 Chr1 33104900 33119748 +
Tpr Tpr5g0526 Chr5 7828958 7843174 +
Vra Vra5g0369 Chr5 3808460 3825365 -
Tpr Tpr5g2837 Chr5 51543759 51550565 +
Aed Aed4g1209 Chr4 11978108 11983107 +
Gma Gma15g01996 Chr15 33275572 33279444 +
Gso Gso15g1748 Chr15 32780452 32784450 +