Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1898 ATGTCAACTGTCTTCTCTGCAGCTGCAAACCTTTCCCTTCTATTTTCTACGTCTCGTCGGTCGTTATCCACTCCACTTCACCCGTACCCCACGAAATTTCATCGAAATGGGTGGCATCCGATTCGCTCCAAATCGAGGACGCAGCCCCTTATTACAAACTCGTTGCTATCTGATAAGTTTCCGACGGTGGGTGCGCGATCAACGGGACCCATTCCATCCACTCACCTCATTGAAGTGGTTAAAACTGCTGCACAGACCGGCGCTCAGGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTGGTGACTGAGACAGATAAAATGAGTGAAGGTGCCATATTAGAAGTGgtgaaaaagaattttgaagATCATCTCGTTCTTGGGGAAGAAGGAGGAATTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTTTAGATGGAACAACAAACTTTGCACATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCTGCTGCGGCAGTGgtTGAGTTTGTTGGAGGTCCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGGTGGTGGAGCATTCTGCAATGGCCAGAGGATCCAAGTGAGTGCAAATAATCAGgTGGAACAATCTCTTTTAGTGACAGGCTTTGGGTATGATCATGATGATGCATGGGCTACTAACATAGACTTGTTCAAAGAATTTACTGATGTCAGCAGGGGTGTAAGACGGCTTGGCGCAGCTGCCGTGGACATGTGTCATGTAGCATTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATGTGGCTGCTGGTGTTTTGATGGTTGAGGAAGCTGGGGGCACAGTTTCTCGGATGGACGGAggaaaattttgtgtttttgataGATCTATTTTGGTTTCAAATGGTCTTCTCCATGCAAAGATGGTGCTTCTCCCACTTTCCAAGTCAACAGCACTTGAATCATGCCTTCTTGCTTGCCCCTTATCTATATTCTTGATTTGTTGGTTTGCGGTCTCGGGGCTCCCTTTTTCAGATTTTGTTAGGGGTGCTTGGAACtgtttctctctcctcttcatTGACCCATGGCTGAGTCCACCACCGTTAACCCTATTAAGGCTGAGCTTGCTATTCTCACCATGTCTATACCCCACTCTCAACTGA 1224 0.442 MSTVFSAAANLSLLFSTSRRSLSTPLHPYPTKFHRNGWHPIRSKSRTQPLITNSLLSDKFPTVGARSTGPIPSTHLIEVVKTAAQTGAQVVMEAVNKPRNITYKGLTDLVTETDKMSEGAILEVVKKNFEDHLVLGEEGGIIGDAASDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPAAAAVVEFVGGPMCWNTRLFSATAGGGAFCNGQRIQVSANNQVEQSLLVTGFGYDHDDAWATNIDLFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDVAAGVLMVEEAGGTVSRMDGGKFCVFDRSILVSNGLLHAKMVLLPLSKSTALESCLLACPLSIFLICWFAVSGLPFSDFVRGAWNCFSLLFIDPWLSPPPLTLLRLSLLFSPCLYPTLN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1898 407 CDD IMPase 76 322 IPR033942 GO:0008934|GO:0046855
Ssu1g1898 407 ProSitePatterns Inositol monophosphatase family signature 2. 287 301 IPR020550 GO:0046854
Ssu1g1898 407 PANTHER PHOSPHATASE IMPL1, CHLOROPLASTIC 52 330 - -
Ssu1g1898 407 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 208 226 IPR020552 GO:0046854
Ssu1g1898 407 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 87 106 IPR020552 GO:0046854
Ssu1g1898 407 Gene3D - 217 334 - -
Ssu1g1898 407 PRINTS Inositol monophosphatase superfamily signature 206 229 IPR000760 GO:0046855
Ssu1g1898 407 PRINTS Inositol monophosphatase superfamily signature 151 167 IPR000760 GO:0046855
Ssu1g1898 407 PRINTS Inositol monophosphatase superfamily signature 284 308 IPR000760 GO:0046855
Ssu1g1898 407 PRINTS Inositol monophosphatase superfamily signature 253 274 IPR000760 GO:0046855
Ssu1g1898 407 PRINTS Inositol monophosphatase superfamily signature 108 128 IPR000760 GO:0046855
Ssu1g1898 407 PRINTS Inositol monophosphatase superfamily signature 130 146 IPR000760 GO:0046855
Ssu1g1898 407 SUPERFAMILY Carbohydrate phosphatase 74 329 - -
Ssu1g1898 407 ProSitePatterns Inositol monophosphatase family signature 1. 151 164 IPR020583 -
Ssu1g1898 407 Pfam Inositol monophosphatase family 77 328 IPR000760 GO:0046855
Ssu1g1898 407 Gene3D - 72 216 - -
Ssu1g1898 407 PANTHER INOSITOL MONOPHOSPHATASE 52 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1898 Ssu-Chr1 51136516 51210992 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1898 K01092 - gmx:100796770 601.282