Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00778 ATGATGGTTGGTACCCTAGAAGAAGACCAAGTGGTGATTCCTCATATTAAAGCTGATCCAGTTGTTGGTGCTGATTCTCTGCCCAACAATGATCTAGCAGAGTCTGAAACACTGCTAGATAGTAGTGTGGAAAAGTCTGATTGTGAGCCGAACAAAGATCTGTCCAATTTGGAAACACAGCCTCACACTGCTTCTGAAACACTGACTGCTAATGATGGAGCAGTGGCATTGCCCAATCAGCATTTGGGTAACTCTGAAGAACCTGTGGTTGACCATTCCAACAATGAGGCCTCACATAACAGTCAGACAGTTAACTCTGAGGTGCCACCAACCAACGCGAACTCCGAAGTTTTATTTGACTGCCAGTTGGTTAGTTCTGAAGAACGAGCAGCGCTTGATAAGAAGGCTTCGCAATGCAGTAACCAGCAGGTGCATTCTGAGGCATTGCTAAACCATAATGTGGGTAATTCTGAAACATATACTAGTAATAGTAATGGTGAGCTTGTATATGAAATACAGCACAGTGATGAGGTGGTTATGTCTGAAACAGTGCAAGCCCACGAGGGGATCATGCCCGAGACTCAGCAAAGCAATGAGGTGATCATGTTTGAGACACAGTTCAACGATGATACCAACATGCCTAAAAGTCAGACAGGCAATGATGTGGTCATGTTGGAAGCTCTGCCTGAAAATGAGTTGGCTTCTGCAGCAGATCCAATCAATCAGCCCTCCCATTCTGAAACTAGTCCTGATAATCAGTTCACGAATCTCCATATGATTCCTGAAGATCAGCTGCCTCAACCTGAATCGCTGCCTCACTCACAACTGCTACCCAATTCTGAACCACTGGTAGATGATCATCTCACAGACATCAAAGTATTATATCACAATCATCTGACCCATTATGAAACACTGCCTAACCATCATTCTAACCATTCTGAGGATTTATCCCACCATCAACTATCTAACAATGATGTATTCTCCCATGATCAGCTGGTCAATTCCCAAATGCTGTCTCATTATGAGCTGGAAAATAGTGAGGCAATGCACCACAATCAGTTAGTCAATTCTCAAGAAAACTATGAAATAGCCATTTCTGATGCCATACCGAGCTATGAGATAATAAGTGCCGAGACACCACTGAACAGTGAGGTTTATATCTCAGAAACCCAGCCTACTAAGCGGAGGAAAAAAAAGTCTATAGTCTGGGAGCACTTCACAATAGAAACAGTAAATCCTGGATGTAGAAGGGCACGGTGCAAGCAATGCGCTCAAACTTTTGCGTATAGTACAGGTTCAAAAGTTGCTGGCACCAGCCATCTCAAACGCCACATTGCCAAGGGGACCTGCTCAGCTCTTCTACGCAACCATGACCATAATCAATTGACCCCATATACTGTACGAAATAGGGGAAGTGGGGCTGGAAATGCTAGCAATACACCTAAAAAACGATATAGATCCCCCAGTACCCCTTATGTCATTTTTGATCAAGATAAATGCCGCCATGAAATTGCTAGAATGATTATTATGCATGATTACCCTCTTCACATGGTTGAGCATCCAGGATTTGTTGCATTTGTTCAAAACCTGCAGCCACAGTTCAACATGGTGACCTTTAACTCTATTCAAGGAGATTGTGTAGCAACTTACCTGATTGAAAAGCATCATCTTTTGAAGTATATTATGGGATTACCTGGACGTGTTTGCTTGACACTGGACGTCTGGACATCAAGTCAATCATTAGGTTATGTATTTATCACAGGGCATTTTGTGGATCATGATTGGAAGTTGCAAAGGCGAATTCTCAATGTTGTATTGGAACCATATCCTTATTCAGATTCTGCACTTACCCATGCTGTTTCTGTTTGCCTTTCTGATTGGGGTTTGGAGGGTAGGCTATTTTCTGTCACTTGTAATCAGGCTCTGAGTAATGTTGCCCTAGAAAATCTCAGACCATTACTCTCTGTGAAGAATCCACACATCCTCAATGGTCAGTTACTAGTTGGTAATTGCATTGCTCAGACTTTAAGTAGTGTTGCGAAGGATTTGTTGGGTTCAGCTCAAGACTTGATCAATAAAATCCGTGATAGTGTTAAGTATGTGAAGACCTCAGAATCACATGAAGAAAAATTCTTGGAGCTGAAACAGCATCTTCAGGTTCCTAGCGAAAGGAGCCTTTTTATTGATGACCAAATTCATTGGAATACATCATATCAAATGCTTGTGGCAGCTTCTGAGCTAAAAGAAGTTTTTTCTTGTTTGGACACTTCTGATCCCGATTACAAGGGAGCCCCATCAATGCTGGACTGGAAGCTGGTTGAAACCCTCTGTAGCTACCTGAAGCCACTTTTTGATGCAGCAAACATTCTTACTTCAACAACTCATCCCACTGTTATCACCTTTTTTCACGAAGTTTGGAAATTGCAATTAGACGCAGCTCGTGCAGTTACGAGTGAAGATCCCTTCATTAGCAGCCTTAATAAAATTATGCATGAAAAGATTGATATTTACTGGAGAGAGTGTAGTCTGGTTTTGGCGCTTGCAGTAGTTTTGGATCCCCGTTTTAAGATGAAGCTTGTTGAGTTCAGTTTCACAAAAATCTATGGCGATGATGCTCATTTATATATCAAGACTGTGGAAGATGGGATTCATGAGATGTTTCATGAGTATGTAGCCCTTCCATTGCCACTAACACCTGCTTATACTGAAGATGGAAGTTCGGGAAACCGTAGTAAGATGGAGGAATGCCCAGGAGATGCTATGTTGTCTGATAATGGTCTGACAGATTTCGATGCCTACATCATGGAAACTACTAGCCAACAGACGAAATCTGAGCTAGATCAGTACCTTGAAGAATCACTGTTACCGCGTGTTCCAGACTTTGATGTATTAGGTTGGTGGAAGCTAAACAAACTCAAGTACCCTACTCTTTCCAAGATGGCCCGGGATATATTATCTGTTCCGGTTTGTACTGTTGCTCCCGATTCTGTGTTCTATTCAAAAAGCAAAGAGATGGATCAGTATCGGAGTTCCTTGAGGCCAGAGACAGTGGAGGCCATTGTATGTTCTAAGGACTGGATGCAGTATGGAACAGCTGAAGCTTCTAATGCGCTTGTGAAAATGGTATTCTAG 3132 0.4237 MMVGTLEEDQVVIPHIKADPVVGADSLPNNDLAESETLLDSSVEKSDCEPNKDLSNLETQPHTASETLTANDGAVALPNQHLGNSEEPVVDHSNNEASHNSQTVNSEVPPTNANSEVLFDCQLVSSEERAALDKKASQCSNQQVHSEALLNHNVGNSETYTSNSNGELVYEIQHSDEVVMSETVQAHEGIMPETQQSNEVIMFETQFNDDTNMPKSQTGNDVVMLEALPENELASAADPINQPSHSETSPDNQFTNLHMIPEDQLPQPESLPHSQLLPNSEPLVDDHLTDIKVLYHNHLTHYETLPNHHSNHSEDLSHHQLSNNDVFSHDQLVNSQMLSHYELENSEAMHHNQLVNSQENYEIAISDAIPSYEIISAETPLNSEVYISETQPTKRRKKKSIVWEHFTIETVNPGCRRARCKQCAQTFAYSTGSKVAGTSHLKRHIAKGTCSALLRNHDHNQLTPYTVRNRGSGAGNASNTPKKRYRSPSTPYVIFDQDKCRHEIARMIIMHDYPLHMVEHPGFVAFVQNLQPQFNMVTFNSIQGDCVATYLIEKHHLLKYIMGLPGRVCLTLDVWTSSQSLGYVFITGHFVDHDWKLQRRILNVVLEPYPYSDSALTHAVSVCLSDWGLEGRLFSVTCNQALSNVALENLRPLLSVKNPHILNGQLLVGNCIAQTLSSVAKDLLGSAQDLINKIRDSVKYVKTSESHEEKFLELKQHLQVPSERSLFIDDQIHWNTSYQMLVAASELKEVFSCLDTSDPDYKGAPSMLDWKLVETLCSYLKPLFDAANILTSTTHPTVITFFHEVWKLQLDAARAVTSEDPFISSLNKIMHEKIDIYWRECSLVLALAVVLDPRFKMKLVEFSFTKIYGDDAHLYIKTVEDGIHEMFHEYVALPLPLTPAYTEDGSSGNRSKMEECPGDAMLSDNGLTDFDAYIMETTSQQTKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVCTVAPDSVFYSKSKEMDQYRSSLRPETVEAIVCSKDWMQYGTAEASNALVKMVF 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00778 1043 ProSiteProfiles Zinc finger BED-type profile. 397 457 IPR003656 GO:0003677
Viun9g00778 1043 MobiDBLite consensus disorder prediction 86 110 - -
Viun9g00778 1043 PANTHER BED FINGER-RELATED 544 1034 IPR045259 -
Viun9g00778 1043 Pfam hAT family C-terminal dimerisation region 945 1027 IPR008906 GO:0046983
Viun9g00778 1043 SUPERFAMILY beta-beta-alpha zinc fingers 400 448 IPR036236 -
Viun9g00778 1043 MobiDBLite consensus disorder prediction 39 64 - -
Viun9g00778 1043 SUPERFAMILY Ribonuclease H-like 559 1028 IPR012337 -
Viun9g00778 1043 SMART bed5 397 453 - -
Viun9g00778 1043 MobiDBLite consensus disorder prediction 463 486 - -
Viun9g00778 1043 MobiDBLite consensus disorder prediction 77 110 - -
Viun9g00778 1043 Pfam Domain of unknown function (DUF4413) 792 890 IPR025525 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00778 Viun-Chr9 5788362 5792528 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00778 - - gmx:106796566 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04740 3 54807841 54812183 Viun9g00778 9 5788362 5792528 PCT