Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00824 ATGGAAAATGATCGAGTTGATACTGATGCTCTACCTAGCAATGATCTTGCAGAGTCTGAAACACTGCCAGACAGTAGTGTGGAAAAGTCCGAGTCTGAGCCTAACAAAGATCTGTCCAATTGGGAAAGACAGCAGAACAAGGAACTTGCGGCTTCTGAAACACTGGCTACTAATGGTGAAGCAGTAACATTAACCAACCAACATTTGGTCACCTCTGAAGAACCTGCAATTGACAATCCAGAGATTTGTGAATCACTAACCAGCAACCAGCCAGGCAATGCTGAGGCCTCGCAGATAAGTCAGATAGTTAATTCTGAGGCACCACACACCAATCAGTCAGCCAACTCTGAAGCTTTATCTGACAGTCAGTTTGTTAGATCTGAAGCACCTCTTGATAAGAATATTGAGTTATTGCCTAGCCATGCCATGTGTAATTCTGAAACACAGACTAGTAATGGTGTGGTTGTACCTGAAACACAGCACGGTGATGAGGTGGTTATGTCTGATACTGTGCAAGGCAATGAGGGTATCATGTCTGAAACTCAGCAAAGCAATGTGGTGATGTCAGAACCTCAGCCTGAAAATGAGTTGGCCAATCCTATAACAGACTCTAACAATCGTCTCTCCCATTCTGAAATTGGTCCTGATAATCAGTTCACAGATGATGTCCATATGATTCCTGAAGATCAGCTGCCTCAACCTGAATCACTGTCTCATTCAGAACCGCTAACCAATTCTGTACCACTGTCAGATACTCAGACGTGCAATGATGTGGTCATGTCAGAACCTCTGCCTGAAAATGAGTTGGCCAATTCCATAACAGATCCCAACAATCAGCTCTCCCATTCTGAAACTGGTCCTGATAATCACTTCACAAATCTCCATATGATTCCTGAAGATCAGCTGCCACAACCTGAATCACTGCCTCATTCAGAACCACTGCCCGATTCTGAACCACAGGCAGATACTCATCTCACAGACATCAAAGCAATATATCATACTCATCTGACCCATTATGATACGCTGCCCAACAACCATGCAGACCAGTCTGAGGCATTATCACTCAATCAGCTATCTAACTCTGAAGCATTGTCCCATGATCAGCTGGTTAATCCCCAAATGTTGCCTCATTATGAGCTCGAAAATAGTGAAACGATGCACCACAATCAGATGGTTAATTCTCAAGCAAACTATGAAATGACTGTTTCTAATGCCATACCCAGCTACGAGATAATAAATGCCGAGACACCACTGGGCTATGAGGATCGTATTCCAGAAACACAGCCTACTAAGCGGAGGAAAAAGAAGTCTATAGTCTGGGAACACTTTACAATAGAAACAGTTAGTCCTGGGTGTAGAAGGGCTTGCTGCAAGCAATGCGCTCAAACTTTTGCCTATAGTACAGGTTCTAAAGTTGCTGGCACCAGCCATCTCAAACGCCACATAGCCAAGGGGACCTGCTCAGCTCTTCTTCGCAACAATGACCCTAATCAATTGACCCCATATACTGCACGAACTAGGGGAAGTGGGGCTGGGAATGCTAGTGATACACCTAAAAGACGATATAGATCCCCGAGTACTCCTTACATCATTTTTGATCAAGACCAATGCCGTCATGATATTGCCAGGATGATCATTATGCATGATTACCCCCTTCACATGGTTGAGCATCCGGGATTTGTGGCATTTGTACAAAATCTGCAGCCTCAGTTCAAAATGGTGACCTTTAACTCTATCCAAGGAGATTGTGTTGCGACTTACCTGATGGAAAAGCAACACATTGTAAAGTATATTGAGGGATTACCTGGACGTGTTTGTTTGACACTGGACATCTGGACGTCAAGTCAATCTTTAGGTTATGTATTTATTACAGGACATTTTGTTGATCATGATTGGAAGTTGCAGAGGCGAATCCTCAATGTTGTAATGGAACCATACCCTGATTCAGATTCTGCACTCACCCATGCTGTAGCTGTTTGCCTTTCTGATTGGGGGTTGGAGGGTAGGCTTTTTTCTGTCACTTGTAATCAAGCACTGAGTAATGTTGCCCTTGAAAATCTCAGACCTTTACTCTCTGTGAAGAATCCACTTATTCTCAATGAAGACTTGATCAAAAAAATCCGTGATAGTGTAAAATATGTGAAGACTTCAGAATCACATGAGGAAAAATTCTTGGAGCTGAAGCAGCATCTTCAGGTTCCTTGTGAAAGGAGCCTTTTTATTGATGATGAAATCCAATGGAATACATCGTATCAAATGCTTGTGGCAGCTTCTGAGATGAAGGAAGTTTTTTCTTGTTTGGACACTTCTGATCCTGATTACAAGGGAGCCCCATCTATGCAGGATTGGAAGCGGGTTGAGATCTTGTGTAGCTACTTGAAGCCACTTTTTGATGCAGCAAACATTCTTACTACAACAACTCATCCCACTGCTATTACCTTCTTTCATGAAGTTTGGAAATTGCAGTTAGATGCAACTCGTGCAGTTACGAGTGAAGACCCCTTCATTAGCAGGCTTAATAAAATTATGCATGAAAAGATTGATAAGTATTGGAGAGAGTGTAGTCTGGTATTGGCGCTTGCAGTAGTGATGGACCCTCGTTTCAAGATGAAGCTTGTGGAGTTCAGTTTCACAAAAATTTACGGCGAGGATGCTCATGTGCATATAAAGACTGTGGATGATGGAATTCATGAGCTGTTTCATGAGTACGTGGCCCTTCCGCTGCCACTAACGCCGGCCTATGCTGAAGATGGAGGTGCTGGAAGCCACAGTAAGATGGAGGAATCACCAGTGTTGACAGATAATGGTCTTACAGATTTTGATGCCTACATCAAGGAAACTACTAGCCAACATATGAGGTCTGAGTTAGATCAGTATCTTGAGGAATCGCTGTTACCACGTGTGCCAGACTTTGATGTCTTAGGTTGGTGGAAGCTAAACAAACTCAAGTACCCTACACTTTCCAAGATGGCTAGGGATATATTATCTGTTCCGGTTTCTACTGTTGCTCCTGACTCTGTGTTTTATTCAAAAAGCAAAGAGATGGATCGGTATCGGAGTTCCTTGCGGCCAGAAACTGTGGAGGCCCTTATGCTTATACCCTGTATTATATATATAGTTGTAACATGCACGAACTCATATTTCCTCTTCCATGGGCTTAGTCATGGTTCAAATGGTGAATCTGCTCTCCCCTAA 3195 0.431 MENDRVDTDALPSNDLAESETLPDSSVEKSESEPNKDLSNWERQQNKELAASETLATNGEAVTLTNQHLVTSEEPAIDNPEICESLTSNQPGNAEASQISQIVNSEAPHTNQSANSEALSDSQFVRSEAPLDKNIELLPSHAMCNSETQTSNGVVVPETQHGDEVVMSDTVQGNEGIMSETQQSNVVMSEPQPENELANPITDSNNRLSHSEIGPDNQFTDDVHMIPEDQLPQPESLSHSEPLTNSVPLSDTQTCNDVVMSEPLPENELANSITDPNNQLSHSETGPDNHFTNLHMIPEDQLPQPESLPHSEPLPDSEPQADTHLTDIKAIYHTHLTHYDTLPNNHADQSEALSLNQLSNSEALSHDQLVNPQMLPHYELENSETMHHNQMVNSQANYEMTVSNAIPSYEIINAETPLGYEDRIPETQPTKRRKKKSIVWEHFTIETVSPGCRRACCKQCAQTFAYSTGSKVAGTSHLKRHIAKGTCSALLRNNDPNQLTPYTARTRGSGAGNASDTPKRRYRSPSTPYIIFDQDQCRHDIARMIIMHDYPLHMVEHPGFVAFVQNLQPQFKMVTFNSIQGDCVATYLMEKQHIVKYIEGLPGRVCLTLDIWTSSQSLGYVFITGHFVDHDWKLQRRILNVVMEPYPDSDSALTHAVAVCLSDWGLEGRLFSVTCNQALSNVALENLRPLLSVKNPLILNEDLIKKIRDSVKYVKTSESHEEKFLELKQHLQVPCERSLFIDDEIQWNTSYQMLVAASEMKEVFSCLDTSDPDYKGAPSMQDWKRVEILCSYLKPLFDAANILTTTTHPTAITFFHEVWKLQLDATRAVTSEDPFISRLNKIMHEKIDKYWRECSLVLALAVVMDPRFKMKLVEFSFTKIYGEDAHVHIKTVDDGIHELFHEYVALPLPLTPAYAEDGGAGSHSKMEESPVLTDNGLTDFDAYIKETTSQHMRSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVSTVAPDSVFYSKSKEMDRYRSSLRPETVEALMLIPCIIYIVVTCTNSYFLFHGLSHGSNGESALP 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00824 1064 PANTHER BED FINGER-RELATED 395 703 IPR045259 -
Cca03g00824 1064 SMART bed5 434 490 - -
Cca03g00824 1064 Pfam Domain of unknown function (DUF4413) 805 903 IPR025525 GO:0003677
Cca03g00824 1064 ProSiteProfiles Zinc finger BED-type profile. 434 494 IPR003656 GO:0003677
Cca03g00824 1064 Pfam hAT family C-terminal dimerisation region 955 1033 IPR008906 GO:0046983
Cca03g00824 1064 MobiDBLite consensus disorder prediction 233 251 - -
Cca03g00824 1064 SUPERFAMILY beta-beta-alpha zinc fingers 437 486 IPR036236 -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 500 523 - -
Cca03g00824 1064 PANTHER - 704 1031 - -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 268 290 - -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 1 45 - -
Cca03g00824 1064 PANTHER - 395 703 - -
Cca03g00824 1064 SUPERFAMILY Ribonuclease H-like 591 1033 IPR012337 -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 22 43 - -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 194 251 - -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 268 321 - -
Cca03g00824 1064 PANTHER BED FINGER-RELATED 704 1031 IPR045259 -
Cca03g00824 1064 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00824 Cca-Chr3 18974787 18978201 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00824 - - gmx:106796566 1522.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02094 11 46474635 46477654 Cca03g00824 03 18974787 18978201 PCT