Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1888 ATGGAGTCTGAGAAGAATTTGAGGTTGCCACACTCTGATGGTTCCAAACAGAGTGAAGAGAGACAACGAAAAGTTTCAACCATGACAAGAAAAGGAGTCTCCGCTGCTTTATCCTATATGGCCTCTTCGGTTCTCTTGGTCATGTTCAACAAAGCAGCCCTCTCCTCTTACAATTTCCCATTTGCAAATGTCATCACACTTGCTCAGATGGTGTTTGCATCTACTATTCTCTATGTGATGAAATCCTTGAAGATAATTTCTTTCACAACTGGTGAGTCGCAGAGCAGTTGTAACAATTCGGCAATATTTGTGTCCTTTAGGACATTAGCCCAGACACTTCCTCTTGCATTAACTTATTTGCTTTTTATGGTAGTGACCATGGAAGCAGTGCGTGGCATAAACATTCCCATGTACACCACACTCAAGAGAACTGTAGTGGCCTTCACAATGGTTATGGAGTATTTTGTGTCAGGGCAGAGACATTCAAGCTTTGTTATTGGAAGTGTTGGGATAATCGTAGCTGGTGCTTTTGTTGCTGGAGCTCGTGACTTGGCATTTGATGCTTATGcctatttaattgtatttatagaaaacatGTGTAAGGCAGTATACCTTGCTTCTGTTTCTCGTGTTGgtaAATCCAGCGGCcttaatatttttggtattgTATGGTGCAATGtgGTGATTTGTGGACCAATCTTGTTTCTCTGGTCCTTACTCAGAGGAGACTTCCAAACAACACTGAACTTCCCATATTTGTTCTACCCTGGATTTCAGGTTGTGATGCTTCTTTCCTGTGCTCTTACTTTCTTTATAAACTACATCGTAGTTTTGAATACAACTATCAACTCGGCACTTACACAGGCAATCTGTGGAAATTTAAAGGATGTTTTAACTAGTGGTCTTGGTTGTTCAATATTCTTGGTCAAGTACTTGGCTTCCTTGGGTCCTGTTTGTATGCCTATTGTAAACTCCAAGGAATATGAGGATGGCCTTTCATATTTTAATGGAGGTTGGCCACTGCGCTGA 1029 0.3984 MESEKNLRLPHSDGSKQSEERQRKVSTMTRKGVSAALSYMASSVLLVMFNKAALSSYNFPFANVITLAQMVFASTILYVMKSLKIISFTTGESQSSCNNSAIFVSFRTLAQTLPLALTYLLFMVVTMEAVRGINIPMYTTLKRTVVAFTMVMEYFVSGQRHSSFVIGSVGIIVAGAFVAGARDLAFDAYAYLIVFIENMCKAVYLASVSRVGKSSGLNIFGIVWCNVVICGPILFLWSLLRGDFQTTLNFPYLFYPGFQVVMLLSCALTFFINYIVVLNTTINSALTQAICGNLKDVLTSGLGCSIFLVKYLASLGPVCMPIVNSKEYEDGLSYFNGGWPLR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1888 342 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g1888 342 PANTHER UDP-SUGAR TRANSPORTER-LIKE PROTEIN 5 307 - -
Ssu1g1888 342 Pfam Triose-phosphate Transporter family 39 299 IPR004853 -
Ssu1g1888 342 PANTHER SOLUTE CARRIER FAMILY 35 5 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1888 Ssu-Chr1 50088609 50096115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1888 7 274 Organic Solute Cotransporters AT2G13650 23.759 7.57e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1888 K15281 - gmx:100794308 499.975