Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1887 ATGGTTGATACCCTCAAAGAAGACAAAGTGGTGGTGACTCCTGATATGAAAAAGGATCAAGTTGTTACTGATGCTCAACCCAGCAATGATCTAGCAGAGTCTGAAACACTGTCAGACAGTAGTGTGGAGAAGTCTGAGTCTGAGCCGAACAGAGATCTGTCCAATTCAGAAACACAGCCTAACATGGAACTTCCTGCTTCTGAAACACTGGCTACTAATGGTGAAGCAGTAACATTACCCAACCAACATTTGGGCAACTCTGAAGAACCTGTGAATGACCATCCAGAGAATTGTGAATCCCTAACCAGCAACCAGCCAGACAATGCTGAGGCCTCACAGAGCAGTCGGACAGTTAGTTCCGAGGTACCACCCACCAATCAGTCGGCCGATTCTGAAGCTTCATCTGACAGTCAGTTGGTTAGTTCTGAAGCAGCTACTCAACCCAGCAACCAGCAGGCGAATACTGAGGCATTGCCAAACCATAATGTGGGTAATTCTGAAACACAGGCTAGTAATGATGTGGTTGTATCTGAAACACAGCACAGCAATGAGGTGATCATGTCTGAAACTGCACAAGGCAATGAGGTGATCATGTCTGAAACTGCACAAGGCAATGAGGTGATCATGTCTGAAACTCAGCAAAGCAATGAGGTGATCATGTCTGAGACACAGCCTGGCAATGAGGCCAACATGCCTAAAACTCAGACATGCAATGATGTGGTCATGTCTGAAGCTCTGCCTGAAAATGGGTTGGCCAATCCTACTACAGGTCCCAACAATCAGCTCTCCCATTCTGAAACTGGTCCTGATAACCAGTTCACAAATCTCCATATGATTCCTGAAGATCAGCTGCCTCAACCTGAATCGCTGCCTCATTCAGAATCGCTACCCAATTCTGAACCACTGACAGATATTCATCTCATAGACATCAAAGTAATACATCATAATCATCTGACCCATCATGAAACACTTCCCAATAATCAACCAAACCATTCTGAGGCATTATCCCGCAATCAGCTATCTTACTCTGAAGCATTGTCTCATGATCAGCTGGTCAATTCCCAAATGCTGCCTCATTATGAACTGGAAAATAGTGAAACAATGCACCACAACCAGACAGTCAATTCTCAAGCAAACTATGAAATAACCATTTCTGATGCCATACCCAGCTATGAGATAATAAATGCTGAGACAGCGCTGAACAATGAGGATCGTATCCCGGAAACACAGCCTACCAAGCGTAGGAAAAAAAAGTCTATAGTCTGGGAACACTTCACAATAGAAACAGTTAGTCCTGGATGTAGAAGGGCACGCTGCAAGCAATGTGCTCAAACTTTTGCCTATAGTACAGGTTCAAAAGTTGCTGGTACCAGCCATCTCAAACGCCACATAGCCAAGGGGACCTGCTCAGCTCTTCTACGCAACCATGACCATAATCAATTGACCCCATATACTGCACGAACTAGGGGAAGTGGGGCTGGAAATGCTAGCGATACACCTAAAAGACGATATAGATCCCCTGGTACCCCTTACATCATTTTTGATCAAGATCAATGCCGCCAGGAGATTGCTAGGATGATCATTATGCATGATTATCCCCTTCACATGGTTGAGCATCCAGGATTTGTTGCATTTGTCCAAAATCTGCAGCCCCAGTTCAAAATGGTGACCTTTAACTCTGTCCAAGGAGATTGTGTTGCTACTTACCTGATTGAAAAGCAACACCTTTTGAAGTATATTGAGGGATTACCTGGACGTGTTTGTTTGACACTGGACATCTGCACATCAAGTCAATCTTTAGGTTATGTATTTATTACAGGACATTTTGTTGATCATGATTGGAAGTTGCAGAGGCGAATTCTCAATGTTGTAATGGAATCATATCCTGATTCCGATTCTGCACTCACCCATGCTGTAGCTGTTTGCCTTTCTGATTGGGGGTTGGAGGGTAGGCTGTTTTCTGTCACTTGTAATAATCAGGCACTGAGTAATGTTGCCCTTGAAAATCTCAGACCTTTACTCTCTGTGAAGAATCCACATATCCTCAATGGTCAGTTGCTAGTTGGTAATTGCATTGCCCGTACATTAGGCAGTGTTGCAAAGGATTTGTTGGGTTCAGCACTAGACTTGATCAATAAAATCcgtgatagtgtaaaatatgtGAAGACTTCAGAATCACATGAGGAAAAATTCTTGGAGCTGAAGCAGCATCTTCAGGTTCCCAGTGAAAGGAGCCTTTTTATTGATGACCAAATTCAATGGAATACATCATATCAAATGCTTGTGGCAGCTTCTGAGCTAAAGGAAGTTTTTTCATGTTTGGACACTTCTGATCCTGATTACAAGGGAGCCCCATCTATGCAGGATTGGAAGCTGGTTGAGACACTCTGTACCTACTTGAAGCCACTTTTTGATGCAGCAAACATTCTTACTACAACAACTCATCCCACTGCTATTACTTTCTTTCACGAAGTTTGGAAATTGCAGTTAGACACAACTCGTGCAGTTACGAGTGAAGACCCCTTCATTAGCAACCTTAATAAAATTATGCGTGAAAAGATTGATAAGTATTGGAGAGAGTGTAGTCTGGTTTTGGCGCTTGCAGTAGTTATGGATCCTCGTTTTAAGATGAAGCTTGTGGAGTTCAGTTTCACAAAAAGCTACGGTGAGGATGCTCATTTGTATATCAAGACCGTGGATGATGGAATTCACGAGCTGTTTCATGAGTATGTAGCCCTTCCCCTCCCACTAACACCAGCATATGCCGAAGATAGAAGTGCTGGTAACCACGGTAAGATGGAGGAATCCCCAGGAGGTACTGTGTTGACAGATAGTGGTCTTACAGATTTTGATGCCTACATCATGGAAACTACTAGCCAACAGATGAAGTCTGAGCTAGATCAGTATCTTGAAGAATCATTGTTACCACGCGTACCAGACTTTGATGTATTAGGTTGGTGGAAGTTAAACAAACTCAAGTACCCTACACTTTCCAAGATGGCCCGTGATATATTATCTGTTCCGGTGTCTACTGTTGCTCCTGACTctgttttttattcaaaaagcaAAGAGATGGATCAGTATAGGAGTTCCTTGCGGCCAGAGACAGTAGAGGCCCTTGTATGTACTAAGGACTGGATGCAGTATGGAACAGCTGAAGCTTCAAATGCGCTTGTGAAAATGGTATTCTAG 3192 0.4298 MVDTLKEDKVVVTPDMKKDQVVTDAQPSNDLAESETLSDSSVEKSESEPNRDLSNSETQPNMELPASETLATNGEAVTLPNQHLGNSEEPVNDHPENCESLTSNQPDNAEASQSSRTVSSEVPPTNQSADSEASSDSQLVSSEAATQPSNQQANTEALPNHNVGNSETQASNDVVVSETQHSNEVIMSETAQGNEVIMSETAQGNEVIMSETQQSNEVIMSETQPGNEANMPKTQTCNDVVMSEALPENGLANPTTGPNNQLSHSETGPDNQFTNLHMIPEDQLPQPESLPHSESLPNSEPLTDIHLIDIKVIHHNHLTHHETLPNNQPNHSEALSRNQLSYSEALSHDQLVNSQMLPHYELENSETMHHNQTVNSQANYEITISDAIPSYEIINAETALNNEDRIPETQPTKRRKKKSIVWEHFTIETVSPGCRRARCKQCAQTFAYSTGSKVAGTSHLKRHIAKGTCSALLRNHDHNQLTPYTARTRGSGAGNASDTPKRRYRSPGTPYIIFDQDQCRQEIARMIIMHDYPLHMVEHPGFVAFVQNLQPQFKMVTFNSVQGDCVATYLIEKQHLLKYIEGLPGRVCLTLDICTSSQSLGYVFITGHFVDHDWKLQRRILNVVMESYPDSDSALTHAVAVCLSDWGLEGRLFSVTCNNQALSNVALENLRPLLSVKNPHILNGQLLVGNCIARTLGSVAKDLLGSALDLINKIRDSVKYVKTSESHEEKFLELKQHLQVPSERSLFIDDQIQWNTSYQMLVAASELKEVFSCLDTSDPDYKGAPSMQDWKLVETLCTYLKPLFDAANILTTTTHPTAITFFHEVWKLQLDTTRAVTSEDPFISNLNKIMREKIDKYWRECSLVLALAVVMDPRFKMKLVEFSFTKSYGEDAHLYIKTVDDGIHELFHEYVALPLPLTPAYAEDRSAGNHGKMEESPGGTVLTDSGLTDFDAYIMETTSQQMKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVSTVAPDSVFYSKSKEMDQYRSSLRPETVEALVCTKDWMQYGTAEASNALVKMVF 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 1 168 - -
Ssu1g1887 1063 Pfam Domain of unknown function (DUF4413) 812 910 IPR025525 GO:0003677
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 37 51 - -
Ssu1g1887 1063 SMART bed5 416 472 - -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g1887 1063 Pfam hAT family C-terminal dimerisation region 965 1047 IPR008906 GO:0046983
Ssu1g1887 1063 PANTHER - 377 1055 - -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 481 507 - -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 52 88 - -
Ssu1g1887 1063 PANTHER BED FINGER-RELATED 377 1055 IPR045259 -
Ssu1g1887 1063 SUPERFAMILY beta-beta-alpha zinc fingers 419 467 IPR036236 -
Ssu1g1887 1063 ProSiteProfiles Zinc finger BED-type profile. 416 476 IPR003656 GO:0003677
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 481 495 - -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 249 276 - -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 22 36 - -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 248 276 - -
Ssu1g1887 1063 SUPERFAMILY Ribonuclease H-like 576 1048 IPR012337 -
Ssu1g1887 1063 MobiDBLite consensus disorder prediction 96 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1887 Ssu-Chr1 50003420 50006611 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1887 - - gmx:106796566 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1121 6 18317852 18319732 Ssu1g1887 1 50003420 50006611 PCT