Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00829 ATGTCAATTGTGTTCTCTGCAGCTGCAAAACTTTCCCCTCTCTTTTCTACTTCATCTCGTTCGTTATTCCCTCCACTTCAGTTTTCTCACACTTACCCTACCAAATTTCATCAAAATGGGTTCCATCCGATTCGCTCCAAATCGAGGACGCAGCCCCTTATTACAAGCTCTTTGCTATCTGATAAGTTTCCAACGGTGGCTGCGCCATCAACGGGACCCATTCCACCCTCTCACCTCATTGAAGTGGTTAAAACTGCTGCACAGACTGGCGCTCAGGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTGGTGACTGAGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAATAATTTTGAAGATCATCTTGTTCTTGGGGAAGAAGGAGGAGTTATAGGAGATGCAACATCTGATTATCTTTGGTGCATTGATCCTTTAGATGGAACAACTAACTTTGCACATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCTGCTGCTGCAGTGGTTGAGTTTGTTGGTGGTCCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGGTGGTGGAGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACGAATCAGGTGGAACGATCTCTTCTAGTTACAGGCTTTGGGTATGATCACGATGATGCGTGGGCTACTAACATAGACTTATTCAAAGAATTTACGGATGTCAGCAGGGGTGTAAGACGGCTTGGTGCAGCTGCTGTGGACATGTGTCATGTAGCATTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATGGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGCGGAAAATTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCTGCTCCATGTAAAGCTTTTGGAGAGAATTGGACCTGCAACAGAGAAATTAAAAAGCAATGGAATTGATTTCTCATTGTGGTATAAACCGGAGAACTACAGGGCAGATGTTTAA 1092 0.4368 MSIVFSAAAKLSPLFSTSSRSLFPPLQFSHTYPTKFHQNGFHPIRSKSRTQPLITSSLLSDKFPTVAAPSTGPIPPSHLIEVVKTAAQTGAQVVMEAVNKPRNITYKGLTDLVTETDKMSEAAILEVVKNNFEDHLVLGEEGGVIGDATSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPAAAAVVEFVGGPMCWNTRLFSATAGGGAFCNGQRIQVSATNQVERSLLVTGFGYDHDDAWATNIDLFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGKFCVFDRSVLVSNGLLHVKLLERIGPATEKLKSNGIDFSLWYKPENYRADV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00829 363 PRINTS Inositol monophosphatase superfamily signature 111 131 IPR000760 GO:0046855
Cca03g00829 363 PRINTS Inositol monophosphatase superfamily signature 133 149 IPR000760 GO:0046855
Cca03g00829 363 PRINTS Inositol monophosphatase superfamily signature 154 170 IPR000760 GO:0046855
Cca03g00829 363 PRINTS Inositol monophosphatase superfamily signature 209 232 IPR000760 GO:0046855
Cca03g00829 363 PRINTS Inositol monophosphatase superfamily signature 256 277 IPR000760 GO:0046855
Cca03g00829 363 PRINTS Inositol monophosphatase superfamily signature 287 311 IPR000760 GO:0046855
Cca03g00829 363 PANTHER PHOSPHATASE IMPL1, CHLOROPLASTIC 52 361 - -
Cca03g00829 363 PANTHER INOSITOL MONOPHOSPHATASE 52 361 - -
Cca03g00829 363 CDD IMPase 79 325 IPR033942 GO:0008934|GO:0046855
Cca03g00829 363 Pfam Inositol monophosphatase family 79 334 IPR000760 GO:0046855
Cca03g00829 363 Gene3D - 220 343 - -
Cca03g00829 363 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 90 109 IPR020552 GO:0046854
Cca03g00829 363 PRINTS Lithium-sensitive myo-inositol monophosphatase family signature 211 229 IPR020552 GO:0046854
Cca03g00829 363 SUPERFAMILY Carbohydrate phosphatase 75 340 - -
Cca03g00829 363 ProSitePatterns Inositol monophosphatase family signature 2. 290 304 IPR020550 GO:0046854
Cca03g00829 363 ProSitePatterns Inositol monophosphatase family signature 1. 154 167 IPR020583 -
Cca03g00829 363 Gene3D - 76 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00829 Cca-Chr3 19155983 19186151 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00829 K01092 - gmx:100796770 678.707