Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00764 ATGATGGTTGGTACCCTCGAAGAAGACCAAGTGGTTATTCCTCGTATTAAAGCTGATCCAGTTGTTGGTGCCGATTCTCTGTCCAGCAATGATCTAGCAGAGTCTGAAACACTGCTAGATAATAGTGTGGAAAAGTCTGATTGTGAGCCGAACAAAGATCTGTCCAATTTGGAAACAGAGCCTCACAAGGAACTTACTGCTTCTGAAACACTGGCTACTAATGATGAAGCAGTGGCATTGCCCAATCAACATTTGGGCAACTCTGAAGAACCTGTGATTGACCATTCTAACAATGGTGAGGCCTCACATAACAGTCAGACAGTTAACTCTGGGGTGCCACCAACCAACACCGACTCTGAAGTTTTATTTGACTGTCAGTTGGTTAGTTCTGAAGCACGAGCAGCGCTTGATAAGAAGGCTTCACAATGCAGTAACCAGCAGGTGCATACTGAGGCATTGCAAAACCATAATGTGGGTAATTCTGAAACATATACTAGTAATAGTAATGGTGAGCTTGTATATGAAATACAGCACAGTGATGAGGTGGTTATGTCTGAAACAGTGCTAGGCCACGAGGGGATCATATCCGAGACTCAGCAAAGCAATGACGTGATCATGTTTGAGACACAGTTCAACAATGATGCCAACATGCCTAAAATCCAGACAGGCAATGATGTGGTCATGTTGGAAGCTCTGCCTGAAAGTGAGTTGGCTTCTGCAGCAGATCCAAACAATCAGCCTTCCCATTCTGAAACTAGTCCTGATAATCAGTTCACGAATTTCCATATGATTCCTGAAGATCAGCTGCCTCAACCTGAATCGCTGCCCCACTCAGAACTGCTACCCAATTCTGAACCACTGGTAGATGATCATCTCACAGACATCAAAGTATTATATCACAATCATCTGACCCATTATGAAACACTGCCTAACAATCATTCTAACCATTCTGAGGATTTAGCCCACCATCAACTATCTAACAATGAAGTATTCTCCCATGATCAGCTGATCAATTCCCAAATGCTGTCTCATTATGAGCTGGAAAATAGTGAAGCAATGCACCACAATCAGTTAGTCAATTCTCAAGAAAACTATGACATAGCCATTTCTGATGCCATACCCAGCTACGAGATAATAAGTGCCGAGACACCACTGAACAGCGAGGTTTATATCTCAGAAACCCAGCCTACTAAGCGGAGGAAAAAAAAGTCTATAGTCTGGGAGCACTTCACAATAGAAACAGTAAGTCCTGGGTGTAGAAGGGCACGGTGCAAGCAATGTTCTCAAACTTTTGCGTATAGTACAGGTTCAAAAGTTGCTGGCACCAGCCATCTCAAACGCCACATTGCCAAGGGGACCTGCTCAGCTCTTTTACGCAACCATGACCATAATCAATTGGTCCCATATACTGTACGAAATAGGGGAAGTGGGGCTGGAAATGCTAGCAGTACACCTAAAAAGCGATATAGATCCCCCAGTACCCCTTATGTCGCTTTTGATCAGGACAAATGCCGCCATGAAATTGCTAGAATGATTATTATGCATGATTACCCTCTTCACATGGTTGAGCATCCGGGATTTGTTGCATTTGTTCAAAATCTGCAGCCACAGTTCAACATGGTGACCTTTAACTCTATTCAAGGAGATTGTGTTGCAAATTACCTGATTGAAAAGAATCATCTTTTGAAGTATATTGTGGGATTGCCTGGACGTGTTTGTTTGACACTGGACATCTGGACATCAAGTCAATCATTAGGTTATGTATTTATCACAGGACATTTTGTGGATCATGATTGGAAGTTGCAAAGGCGAATTCTCAATGTTGTATTGGAACCATATCCTTATTCAGATTCGGCACTTACCCATGCTGTTGCTGTTTGCCTTTCTGAGTGGGATTTGGAGGGTAGGCTATTTTCTGTCACTTGTAATCAGGCTCTGAGTAATGTTGCCCTTGAAAATCTCAGACCATTACTCTCTGTGAAGAATCCACACATCCTCAATGGTCAGTTACTAGTTGGTAATTGCATTGCTCAGACTTTAAGTAGTGTTGCAAATGATTTGTTGGGTTCGGCTCAAGACTTGATCAGTAAAATCCGTGATAGTGTTAAGTATGTGAAGACCTCCGAATCACACGAGGAAAAATTCTTGGAGCTGAAACAGCATCTTCAGGTTCCTAGCGAAAGGAGCCTTTTTATTGATGACCAAATTCATTGGAATACATCATATCAAATGCTTGTGGCAGCTTCTGAGCTAAAGGAAGTTTTTTCTTGTTTGGACACTTCTGATCCCGATTACAAGGGAGCCCCATCAATGCAGGACTGGAAGCTGGTTGAAACCCTCTGTAGCTACCTGAAGCCGCTTTTTGATGCAGCAAACATTCTTACTGCAACAACTCATCCCACTGTTATCACCCTTTTTCAAGAAGTTTGGAAATTGCAATTAGACGCAGCTCGTGCAGTTACGAGTGAAGATCCCTTCATTAGCAGCCTTAATAAAATTATGCATGAAAAGATTGATATTTACTGGAGAGAGTGTAGTCTGGTTTTGGCGCTTGCAGTAGTTTTGGATCCCCGTTTTAAGATGAAGCTTGTTGAGTTCAGTTTCACAAAAATCTATGGCGATGATGCTCATTTATATATCAAGACTGTAGAAGATGGAATTCATGAGATGTTTCATGAGTATGTAGCTCTTCCATTGCCACTAACACCTGCTTATGCTGAAGATAGAAGTTCGGGAAACCGTAGTAGGATGGAGGAATACCCAGGAGATGCTGTGTTGTCTGATAATGGTCTAACAGATTTCGATGCGTACATCATGGAAACTACTAGCCAACAGACGAAGTCTGAGCTAGATCAGTACCTTGAAGAATCATTGTTACCGCGTGTTCCAGACTTTGATGTATTAGGTTGGTGGAAGCTAAACAAACTCAAGTACCCTACTCTTTCCAAGATGGCCCGGGATATATTATCTGTTCCGGTTTGTACTGTTGCTCCCGATTCTGTGTTTTATTCAAAAAGCAAAGAGATGGATAATTATCGGAGTTCCTTGAGGCCAGAGACAGTAGAGGCAATTGTATGTTCTAAGGACTGGATGCAGTATGGAACAGCTGAAGCTTCTAATGCGCTTGTGAAAATGGTATTCTAG 3144 0.423 MMVGTLEEDQVVIPRIKADPVVGADSLSSNDLAESETLLDNSVEKSDCEPNKDLSNLETEPHKELTASETLATNDEAVALPNQHLGNSEEPVIDHSNNGEASHNSQTVNSGVPPTNTDSEVLFDCQLVSSEARAALDKKASQCSNQQVHTEALQNHNVGNSETYTSNSNGELVYEIQHSDEVVMSETVLGHEGIISETQQSNDVIMFETQFNNDANMPKIQTGNDVVMLEALPESELASAADPNNQPSHSETSPDNQFTNFHMIPEDQLPQPESLPHSELLPNSEPLVDDHLTDIKVLYHNHLTHYETLPNNHSNHSEDLAHHQLSNNEVFSHDQLINSQMLSHYELENSEAMHHNQLVNSQENYDIAISDAIPSYEIISAETPLNSEVYISETQPTKRRKKKSIVWEHFTIETVSPGCRRARCKQCSQTFAYSTGSKVAGTSHLKRHIAKGTCSALLRNHDHNQLVPYTVRNRGSGAGNASSTPKKRYRSPSTPYVAFDQDKCRHEIARMIIMHDYPLHMVEHPGFVAFVQNLQPQFNMVTFNSIQGDCVANYLIEKNHLLKYIVGLPGRVCLTLDIWTSSQSLGYVFITGHFVDHDWKLQRRILNVVLEPYPYSDSALTHAVAVCLSEWDLEGRLFSVTCNQALSNVALENLRPLLSVKNPHILNGQLLVGNCIAQTLSSVANDLLGSAQDLISKIRDSVKYVKTSESHEEKFLELKQHLQVPSERSLFIDDQIHWNTSYQMLVAASELKEVFSCLDTSDPDYKGAPSMQDWKLVETLCSYLKPLFDAANILTATTHPTVITLFQEVWKLQLDAARAVTSEDPFISSLNKIMHEKIDIYWRECSLVLALAVVLDPRFKMKLVEFSFTKIYGDDAHLYIKTVEDGIHEMFHEYVALPLPLTPAYAEDRSSGNRSRMEEYPGDAVLSDNGLTDFDAYIMETTSQQTKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVCTVAPDSVFYSKSKEMDNYRSSLRPETVEAIVCSKDWMQYGTAEASNALVKMVF 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00764 1047 SUPERFAMILY Ribonuclease H-like 566 1032 IPR012337 -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 239 261 - -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 38 65 - -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 471 490 - -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 86 117 - -
Vimu10g00764 1047 PANTHER BED FINGER-RELATED 548 1038 IPR045259 -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 89 117 - -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 23 71 - -
Vimu10g00764 1047 Pfam hAT family C-terminal dimerisation region 949 1031 IPR008906 GO:0046983
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 238 261 - -
Vimu10g00764 1047 SMART bed5 401 457 - -
Vimu10g00764 1047 Pfam Domain of unknown function (DUF4413) 796 894 IPR025525 GO:0003677
Vimu10g00764 1047 ProSiteProfiles Zinc finger BED-type profile. 401 461 IPR003656 GO:0003677
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 267 286 - -
Vimu10g00764 1047 MobiDBLite consensus disorder prediction 471 493 - -
Vimu10g00764 1047 SUPERFAMILY beta-beta-alpha zinc fingers 404 452 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00764 Vimu-Chr10 6695139 6698282 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00764 - - gmx:106796566 1577.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00936 7 9074874 9076640 Vimu10g00764 10 6695139 6698282 PCT