Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0078 . . . . . . . Aed9g0065 . . . . . . . . . . . Apr5g1817 . . . . . . Bva13g01626 . . . . Cca07g00078 . . . . . . . . Gma04g00064 . . . Gso4g0063 . . . Lal1g0062 . . . . . Lan13g0078 . . . . . . . . . . . . . . . . . Lja1g2357 . . . . . . . . . . . . . . . . . Psa7g4021 . . . . . . . . . . . . . . . . . . . Sto2g0842 . . . . . . . . . . . . . . . . . . Vra5g1819
Vvi3g0079 . . . . . . . . Aev04g3426 . Ahy13g0783 . Aip03g00822 . . . Amo13g1051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g4166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0080 . . . . . . . . . . . . Aip03g00827 . . . Amo13g1046 . . Apr5g1818 . . . . . . . Bva14g02286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g2358 . . . . . . . . . . . . . . . . . Psa7g4164 . . . . . . . . . . . . . . . . . . . Sto2g0843 . . . . . . . . . . . . . . . . . . .
Vvi3g0081 . . . . . . . . Aev04g3430 . . . Aip03g00831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto2g0844 . . . . . . . . . . . . . . . . . . .
Vvi3g0082 . . . . . . . . . . Ahy13g0791 . Aip03g00842 . . . Amo13g1016 . . . . . . . . . . Bva14g02287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja1g2360 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0073 Chr3 815278 815673 -
Vvi Vvi3g0074 Chr3 819845 820716 -
Vvi Vvi3g0075 Chr3 847550 848413 -
Vvi Vvi3g0076 Chr3 849287 849565 -
Vvi Vvi3g0077 Chr3 854358 855373 +
Vvi Vvi3g0078 Chr3 856872 857987 -
Aed Aed9g0065 Chr9 457280 458689 +
Apr Apr5g1817 Chr5 21436896 21438697 -
Bva Bva13g01626 Chr13 9752600 9754591 +
Cca Cca07g00078 Chr07 1046803 1048394 +
Gma Gma04g00064 Chr04 549245 550663 +
Gso Gso4g0063 Chr4 542573 543991 +
Lal Lal1g0062 Chr1 464972 466636 +
Lan Lan13g0078 Chr13 450109 451773 +
Lja Lja1g2357 Chr1 27276433 27277839 -
Psa Psa7g4021 Chr7 331206850 331207158 -
Sto Sto2g0842 Chr2 7343162 7344277 -
Vra Vra5g1819 Chr5 24191560 24192972 -
Vvi Vvi3g0079 Chr3 858886 859170 -
Aev Aev04g3426 Chr04 32828939 32829241 -
Ahy Ahy13g0783 Chr13 8261369 8262073 -
Aip Aip03g00822 Chr03 8034386 8035195 -
Amo Amo13g1051 Chr13 12680498 12681197 +
Lal Lal2g0107 Chr2 660969 664212 -
Psa Psa7g4166 Chr7 339212316 339212597 -
Vvi Vvi3g0080 Chr3 863083 863370 +
Aip Aip03g00827 Chr03 8042409 8043194 +
Amo Amo13g1046 Chr13 12672917 12673399 -
Apr Apr5g1818 Chr5 21439261 21440603 -
Bva Bva14g02286 Chr14 19735427 19735723 -
Lja Lja1g2358 Chr1 27278224 27278913 -
Psa Psa7g4164 Chr7 339194940 339195796 -
Sto Sto2g0843 Chr2 7351144 7355134 -
Vvi Vvi3g0081 Chr3 864608 864874 +
Aev Aev04g3430 Chr04 32837030 32837302 +
Aip Aip03g00831 Chr03 8060076 8060682 +
Sto Sto2g0844 Chr2 7356522 7359120 -
Vvi Vvi3g0082 Chr3 866406 866693 +
Ahy Ahy13g0791 Chr13 8341163 8344191 +
Aip Aip03g00842 Chr03 8133498 8134089 +
Amo Amo13g1016 Chr13 12489074 12489416 -
Bva Bva14g02287 Chr14 19739131 19739427 -
Lja Lja1g2360 Chr1 27318041 27318355 -