Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1817 ATGCACACCAACGGTGTTCCCTTGGATACCTACGCTTTGTGTAGCACTTTGACGGCTTCCTCTAAAGTCAAACACGTTCATTTTGGGAAACAGATACATGCCCTTGTAGGAAAATCAGGTTGGTCTTCTAGTGTGTTTGTGGGCAGTGCTCTCATTGATTTGTATTCCAAATTGTCCAATGTAAAAGATGCAGCCGTTGTGTTTGATGAAATTCCTGAGAAGAACTCTGTCTGTGCCAATGCACTTTTGTCGGGTTATGGCGAGGCAGGGTTATGGATTGAGGAACTTGAACTTGTTAGGAAGATGCCCGAGTTGAAACTAAAGTATGATCAGTTCACACTATCAGCAGCTTTACGGGCATGCACTGGATTATCTGCGGTTGAATTGGGTAGGCAACTGCATGGTTACTTGCTCCGTACGACACCTGATGTAGAGAGTGATGTGTTTCTTCAGAGCGCATTGATTGAGATGTATGGCAAGTGTGGCTTGGTAAAGAAGGCTTGGCAAGTCTTCAAGTTGGTTGGAATGGAGAACAGAAAAGAAAGAAGCAGAGACGTTGTGTTGTGGACTTCCATGCTTGGTGTTTATGGTAGGAATGGACATTACAAGGAAGTTATTGATTTGTACAATGATATGTTGGTGGAAGGAATCAGACCAGATGGTATAGCGTTCCTGACAGTGATCTCAGCTTGTGCTCGCACAGGAGAAGTACACGCCGGTGTCAAGTATTTTGAATCAATGACTAATGATTTCAAGTTAGATCCTGGTCCAGAGCATTACAGTTGCCTAGTTGATTTGCTTTGTAGGGCTGGTGAATTGCAGAAGGCATGGGAATTACTAAATGAGACGCTTTATACGGGAACGGGAAATTGTGTGGTGTCAATGTGGGGAGCTCTACTCAGTGCTTGTGTGGATCGTGGGAATATAGAGCTGGGCAAATTGGCAGCTCAGAGAGGTCTTGAGTTGGATCCTCAAAATGCTGGGATATGCATTATGCTATCAAATTTGTATGCCCGATTTGGTATGTGGGATGAGATTGGACAGTTAAGGGTATTGATCAAAGCAAGAGGGTTAAGAAAAGATGTTGGATGCAGTTGGGTTCAGGTGACTAGCTAG 1116 0.4409 MHTNGVPLDTYALCSTLTASSKVKHVHFGKQIHALVGKSGWSSSVFVGSALIDLYSKLSNVKDAAVVFDEIPEKNSVCANALLSGYGEAGLWIEELELVRKMPELKLKYDQFTLSAALRACTGLSAVELGRQLHGYLLRTTPDVESDVFLQSALIEMYGKCGLVKKAWQVFKLVGMENRKERSRDVVLWTSMLGVYGRNGHYKEVIDLYNDMLVEGIRPDGIAFLTVISACARTGEVHAGVKYFESMTNDFKLDPGPEHYSCLVDLLCRAGELQKAWELLNETLYTGTGNCVVSMWGALLSACVDRGNIELGKLAAQRGLELDPQNAGICIMLSNLYARFGMWDEIGQLRVLIKARGLRKDVGCSWVQVTS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1817 371 TIGRFAM PPR: pentatricopeptide repeat domain 260 282 IPR002885 -
Apr5g1817 371 TIGRFAM PPR: pentatricopeptide repeat domain 224 248 IPR002885 -
Apr5g1817 371 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Apr5g1817 371 Pfam PPR repeat family 184 233 IPR002885 -
Apr5g1817 371 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 367 - -
Apr5g1817 371 Pfam E motif 308 368 IPR046848 -
Apr5g1817 371 SUPERFAMILY TPR-like 247 345 IPR011990 GO:0005515
Apr5g1817 371 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515
Apr5g1817 371 Gene3D Tetratricopeptide repeat domain 150 339 IPR011990 GO:0005515
Apr5g1817 371 Pfam PPR repeat 152 172 IPR002885 -
Apr5g1817 371 Pfam PPR repeat 78 105 IPR002885 -
Apr5g1817 371 Pfam PPR repeat 49 75 IPR002885 -
Apr5g1817 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Apr5g1817 371 Pfam PPR repeat 259 282 IPR002885 -
Apr5g1817 371 PANTHER OS02G0126500 PROTEIN 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1817 Apr-Chr5 21436896 21438697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1817 1 369 Glycoside Hydrolase AT3G49170 34.324 5.21e-67 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1817 - - aprc:113865303 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1817 5 21436896 21438697 Apr5g1817 5 21436896 21438697 ECH