Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1819 ATGTCTAAGTCCAACATATTTGAGTTTTTGCACCAATCTCGTGTAAGTGGCGATGTCTCAGCCATTAAGAAACTCCACGCTCAGCTACTCAGAACAGGCATGATCTTCCTATCCCATCATCTCCACACCCAACTCATTTCCACATACGCAGCCTGCCTCCCTTACAACAACCTTCACTTGGTCAATAACTTCTTCAAATGCATGAATTCCACCAACCCATTACACTTCAACGTCATAATATCTTATTTCTGTCGCAAAGGTTTCCCCTTTCTCGCTCTCGCCTCCTTCTCCTTCATGCACAGCAACGGAGTCCCCTTAGATACCTACGCTTTGTGTAGCACGTTGACCGCCTCATCCAAAGTCAAAGACCTTAATTTTGGGATGCAGATACATACCCAGATGGTAAAATCAGGTTGGTCTTCTAGCGTGTTTGTTGGTAGTGCTCTCATCGATCTCTACTCCAAATTGTCCAATGTACAAGATGCAGCCCTTGTGTTCGATGAAATTCCCGACAAGAACACCGTGTGTGCCAATGCACTTTTGTCAGGTTATGCCGAAGCTGGGCTTTGGGTTCGGGACCTTGAACTTGTTAGGAAGATGCACGAGTTGAAATTGAAGCATGATCACTTTACTCTATCAGCAGCTTTGCGTGCATGCACCGGATTGTCTGCTGTTGAAATGGGTAGGCAAGTGCATGGTTACTTGCTCCGTACGATACCTGATGTAGAGAGTGATGTGTTTCTCCAGAGCGCGTTGATCGAGATGTATGGAAAGTGTGGATTAGTAAAGAAGGCTCGGCAAGTGTTGGACTTGGATGGGATGGAGATTAGGAAAGAAGGAAGAAGCAGGGACATTGTGTTATGGACTTCAATGCTGGGTGTGTACGGTAGGAATGGACATTACAAGGAAGTGATTGATTTGTTTGATGAGATGAGGATGGAAGGAATCCGGGCGGACGGAATAGCATTCTTGACAGTGATATCTGCTTGTGGTCGCACTGGCCAAGTTCATGCTGGTGTCAAGTATTTTGAATCAATGACTAATGAGTTCAAGTTAGATCCTGGTCCAGAACATTACAGCTGCCTGGTTGATTTACTTTGTAGGGCTGGTGAATTGCAGAGGACGTGGGAATTGTTGAATGAGACACTCTATAAGGGAATGGGAAATTGTAGTGTTTCAATGTGGGGAGCTCTACTGAGTGCTTGTGTGGATCGAGGGGATTTAGAGCTGGGAAAATTGGCAGCAAAGAGGGCTCTAGAGTTAGATCCTCAAAATGTTGGGATATGCATTATGCTGTCAAATCTTTATGCTCGGTTTGGCATGTGGGAGGAAATTGGAAACTTGAGGGAATTGATCAAAACAAGAGGTTTAACAAAAGATGTTGGATGCAGTTGGGTTCAGATCACTCACTAG 1413 0.4494 MSKSNIFEFLHQSRVSGDVSAIKKLHAQLLRTGMIFLSHHLHTQLISTYAACLPYNNLHLVNNFFKCMNSTNPLHFNVIISYFCRKGFPFLALASFSFMHSNGVPLDTYALCSTLTASSKVKDLNFGMQIHTQMVKSGWSSSVFVGSALIDLYSKLSNVQDAALVFDEIPDKNTVCANALLSGYAEAGLWVRDLELVRKMHELKLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTIPDVESDVFLQSALIEMYGKCGLVKKARQVLDLDGMEIRKEGRSRDIVLWTSMLGVYGRNGHYKEVIDLFDEMRMEGIRADGIAFLTVISACGRTGQVHAGVKYFESMTNEFKLDPGPEHYSCLVDLLCRAGELQRTWELLNETLYKGMGNCSVSMWGALLSACVDRGDLELGKLAAKRALELDPQNVGICIMLSNLYARFGMWEEIGNLRELIKTRGLTKDVGCSWVQITH* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1819 470 TIGRFAM PPR: pentatricopeptide repeat domain 323 348 IPR002885 -
Vra5g1819 470 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Vra5g1819 470 Pfam PPR repeat family 284 330 IPR002885 -
Vra5g1819 470 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 20 466 - -
Vra5g1819 470 Pfam PPR repeat 76 104 IPR002885 -
Vra5g1819 470 Pfam PPR repeat 147 172 IPR002885 -
Vra5g1819 470 Pfam PPR repeat 250 270 IPR002885 -
Vra5g1819 470 Pfam PPR repeat 358 386 IPR002885 -
Vra5g1819 470 Gene3D Tetratricopeptide repeat domain 74 243 IPR011990 GO:0005515
Vra5g1819 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vra5g1819 470 Gene3D Tetratricopeptide repeat domain 353 465 IPR011990 GO:0005515
Vra5g1819 470 Gene3D Tetratricopeptide repeat domain 244 352 IPR011990 GO:0005515
Vra5g1819 470 PANTHER OS02G0126500 PROTEIN 20 466 - -
Vra5g1819 470 Pfam E motif 407 467 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1819 Vra-Chr5 24191560 24192972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1819 23 468 Glycoside Hydrolase AT3G49170 29.911 1.44e-66 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1819 - - gmx:100798332 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1819 5 24191560 24192972 Vra5g1819 5 24191560 24192972 ECH