Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0063 ATGTCCAAGTCCAACGTATTTGAGTTTTTGCACCAATCCCGTGGAAGTGGCAATGTCTCAGCCATTAAGAAACTCCATGCTCAGCTACTCAGAACAGGCATGCTCTTCCTCTCCCATAATCTCCACACCCAACTCATTGCCACATATGCCGCATGCCTCCCTAACAACAACCTTCAATCCCTTAACAACTTCTTCAAATGCATGAACTCCACCAACCCATTACACTTCAACGCCATAATATCCGATTTCTGTCGCAAAGGCTTACCCTTTCTCGCTCTCGCCTCCTTCTCCTTCGTGCACGCCAACGGTGTCCCCTTGGATACATACGCTTTGTGTAGCACGTTGACCGCCTCCTCCAAAGTCAAAGATCTTAATTTAGGGAAGCAGATACACGCCCACGTGGCGAAATCAGGTTGGTCTTCTAGCGTGTTTGTGGGTAGTGCTCTCATTGATTTTTACTCCAAATTGTCGAATGTAAAAGATGCAGCCCATATGTTCGATGAAATTCCTGAGAAGAACACTGTGTGTGCCAATGCACTTTTGTCGGGTTATGCCGAGGCCGGCCTGTGGGTTCAGGAACTTCAACTAGTTAGGAAGATGCCCGTGTTGAAATTGAAGCATGATCACTTTACTTTATCAGCAGCTTTGCGTGCTTGCACTGGATTATCTGCTGTTGAAATGGGTAGGCAAGTGCATGGTTACTTGCTCCGTACGACACCTGATATAGAGAGTGATGTGTTTCTTCAGAGCGCGTTGGTTGAGATGTATGGCAAGTGTGGATTAGTGAAGAAGGCTTGGCAAGTGTTCAAGTTGGTTGGGATGGAGATTAGAAAAGAAGTAAGAAGCAGGGACGTTGTGTTATGGACTTCAATGCTTGGTGTGTATGGTAGGAATGGGCATTACAAGGAAGTGATTGATTTGTATGATGAGATGTTGGTGGAAGGAATCAGACCGGATGGAATAGCCTTCTTGACAGTGATCTCAACTTGTGGTCACACTGGCCAAGTTCATGCTGGTGTCAAGTATTTTGAGTCTATGGCTAATGATTTCAAGTTAGATCCTGGTCCAGAACATTACAGCTGCCTCGTTGATTTGCTTTGTAGGGCTGGTGAATTGCAGAGGGCGTGGGAATTGCTGAATGAGACACTCTATAAGGGAATGGGAAATTGTTCTGTGTCAATGTGGGGAGCACTACTCAGTGCTTGTGTGGATCGTGGGGATTTAGACCTGGGAAAATTGGCTGCTCAGAGGGCCCTTGAGTTAGATCCTCAAAATGTTGGGATATGCATTATGCTATCAAATCTGTATGCCCGGTTTGGTATGTGGGAGGAAATTGGTCACTTGAGGGTATTGATCAAAGCAAGAGGGCTAAAAAAAGATGTTGGATGCAGTTGGGTTCAGGTGGGTTCAGGTGACTGA 1419 0.4595 MSKSNVFEFLHQSRGSGNVSAIKKLHAQLLRTGMLFLSHNLHTQLIATYAACLPNNNLQSLNNFFKCMNSTNPLHFNAIISDFCRKGLPFLALASFSFVHANGVPLDTYALCSTLTASSKVKDLNLGKQIHAHVAKSGWSSSVFVGSALIDFYSKLSNVKDAAHMFDEIPEKNTVCANALLSGYAEAGLWVQELQLVRKMPVLKLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTTPDIESDVFLQSALVEMYGKCGLVKKAWQVFKLVGMEIRKEVRSRDVVLWTSMLGVYGRNGHYKEVIDLYDEMLVEGIRPDGIAFLTVISTCGHTGQVHAGVKYFESMANDFKLDPGPEHYSCLVDLLCRAGELQRAWELLNETLYKGMGNCSVSMWGALLSACVDRGDLDLGKLAAQRALELDPQNVGICIMLSNLYARFGMWEEIGHLRVLIKARGLKKDVGCSWVQVGSGD* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0063 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Gso4g0063 472 Pfam PPR repeat family 283 330 IPR002885 -
Gso4g0063 472 Gene3D Tetratricopeptide repeat domain 76 243 IPR011990 GO:0005515
Gso4g0063 472 Gene3D Tetratricopeptide repeat domain 244 438 IPR011990 GO:0005515
Gso4g0063 472 SUPERFAMILY TPR-like 343 444 IPR011990 GO:0005515
Gso4g0063 472 Pfam PPR repeat 358 386 IPR002885 -
Gso4g0063 472 Pfam PPR repeat 147 173 IPR002885 -
Gso4g0063 472 Pfam PPR repeat 251 270 IPR002885 -
Gso4g0063 472 Pfam PPR repeat 176 201 IPR002885 -
Gso4g0063 472 PANTHER OS02G0126500 PROTEIN 20 466 - -
Gso4g0063 472 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 20 466 - -
Gso4g0063 472 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Gso4g0063 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Gso4g0063 472 Pfam E motif 407 467 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0063 Gso-Chr4 542573 543991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0063 18 469 Glycoside Hydrolase AT3G49170 30.837 5.27e-73 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0063 - - gmx:100798332 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0063 4 542573 543991 Gso4g0063 4 542573 543991 ECH
Gso4g0063 4 542573 543991 Gso6g0056 6 539977 541389 GST