Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0079 ATGGGCTTTCGATTGCCTGGGATCGTTAACGCTAAGCAGATCCTACAGCGAGTGCGGATGGGTGGAGAGATAAAAAATGTACCAAAAGGTTATTTTGCTGTCTATGTGGGAGAAGACCAGAAGAAGCGATTTCTGGTGCCGGTTTCTTACTTGAAGGATCCTTCATTTCAGAACTTATTGAGTCAGGCAGAGGAAGAGTTCGGGTTTGATCATCCAAGGGGAGGCCTCACAATCCCATGCACAGAAGAAGCCTTCATTGATGTCACTTGTAGTTTGAATTGCTGA 285 0.4561 MGFRLPGIVNAKQILQRVRMGGEIKNVPKGYFAVYVGEDQKKRFLVPVSYLKDPSFQNLLSQAEEEFGFDHPRGGLTIPCTEEAFIDVTCSLNC* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0079 94 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 92 IPR003676 GO:0009733
Vvi3g0079 94 Pfam Auxin responsive protein 25 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0079 Vvi-Chr3 858886 859170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0079 26 85 Calmodulin-binding Proteins AT3G43120 55.000 2.89e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0079 K14488 - vvi:100248668 196.438