Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0062 ATGTACGCATATCTGTTACGTGGGTATGCGCATGACTTAGACTTTCTGAGCGGAAGAGCTATTCACGCTATATTCATCAAAGCCTCTTTTCCTGTTACTCTTTTTCTTCATAACCATTTGCTTAACTTCTATCTTAAAATTAAAGACCTTCCTTCTGCTCTCAAACTGTTTGATGAAATGCCACACAAGAATGTTGTCTCCTGGTCCTCTCTCATGGCCGGTTTTATCCATAATGCCTCTCCTTCCCAATCACTTTCTTTATTCACTCGTATGCATCATGAGGGTCTCACTATACCAAATGAGTTCACACTTGTCAGCGCCCTCCACGCCTCCTCGTTAGCTCAAAATGTCACCATTCATGTTCCTTATCAGATTTATTCTTTGATTGTGCGCTTAGGACTCGACTCTAATATCTTCTTACTCAATGCCTTTTTGTCTGCCTTAGTCAAGCATGGTAAATTGGATGAAGCATTGCAAGTTTTTGAGACAAGTCACGACAAGGATATTGTGTCGTGGAATACCATGATGGCGGGTTACTTGCAGTTTTCTTGTGAGGACATTCCTGGATTTTGGTGTTGCATGAATAATAACGATATAAAACCTGATAACTTCACATTTGCTACTGCCCTCACCGGGTTGGCTGCTCTATCTCATTCGCATTTTCGAATGGGAATACAAATTCATGCATGCCTTGTCAAGACTGGTTATGGAGATGATATGTGTGTAGGGAACTCTCTGGTTGATATGTACCTAAAAAATAAAAAATTGGTGGAGGGTTTCAGAGCTTTCGATGAGATGCCTAACAAAGATGTGTGCTCTTGGTCCCAGATGGCTGCCGGATGTCTACAGTGTGGGGAACCAAGGAAGGCACTTGATGTCATTGCACAAATGAGGAAAATCGGTGTTAAGCCGAATAAATTTACCTTGGCAACTGCTCTAAATGCTTGTGCGACTTTGGCTTCACTAGAGGAAGGGAAACAAGTTCATGGCTTGAGGACTAAACTTGGAAGTGATATGGACTTATGTGTTGATAATGCTCTTCTTGACATGTATGCAAAAAGTGGATGCATGGATAGTGCATGGGGTGTTTTTAGATCAATGAGTTCCCGTACTGTCATCTCATGGACGTCAATGATAATGGCATGTGCTCAGAATGGCCAATCCAAAGAAGCTCTTCAAATTTTTGATGAAATGAGGAAGACAAGTGTAGAGCCGAATTACATCACCTTCATTTGTGTTCTTTATGCATGTAGTCAAGGTGGGTTTGTAAATGAAGGATGGACAATTTTTTCCTCTATGGCCAAGGACTACGGAATCTTCCCCGGCGAAGATCACTATGCTTGTATGGTCAATATCCTTGGTCGAGCCGGGCTTATTAAAGAAGCTGAGGAGTTAATCCTAAGAATGCCATTTAAGGCAGGTGTGCTAGTTTGGCAAACATTGCTCAGTGCTTGTCAGCTTCACGGTGATGTAGAAACAGGGAAACTTGCAGCACAACATGCCATAAAACAGGACCAAAAGGATCCATCAACCTATTTATTATTGTCTAACATGTTTGCTGAATTCAGCAATTGGGATGGTGTGGTTATTCTCAGAGAACTAATGGAGACAAGGGATGTCAAGAAAGTACCAGGAACTAGTTGGATTGAAATCGAAAATATTTAA 1665 0.4144 MYAYLLRGYAHDLDFLSGRAIHAIFIKASFPVTLFLHNHLLNFYLKIKDLPSALKLFDEMPHKNVVSWSSLMAGFIHNASPSQSLSLFTRMHHEGLTIPNEFTLVSALHASSLAQNVTIHVPYQIYSLIVRLGLDSNIFLLNAFLSALVKHGKLDEALQVFETSHDKDIVSWNTMMAGYLQFSCEDIPGFWCCMNNNDIKPDNFTFATALTGLAALSHSHFRMGIQIHACLVKTGYGDDMCVGNSLVDMYLKNKKLVEGFRAFDEMPNKDVCSWSQMAAGCLQCGEPRKALDVIAQMRKIGVKPNKFTLATALNACATLASLEEGKQVHGLRTKLGSDMDLCVDNALLDMYAKSGCMDSAWGVFRSMSSRTVISWTSMIMACAQNGQSKEALQIFDEMRKTSVEPNYITFICVLYACSQGGFVNEGWTIFSSMAKDYGIFPGEDHYACMVNILGRAGLIKEAEELILRMPFKAGVLVWQTLLSACQLHGDVETGKLAAQHAIKQDQKDPSTYLLLSNMFAEFSNWDGVVILRELMETRDVKKVPGTSWIEIENI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0062 554 Gene3D Tetratricopeptide repeat domain 219 324 IPR011990 GO:0005515
Lal1g0062 554 Gene3D Tetratricopeptide repeat domain 123 218 IPR011990 GO:0005515
Lal1g0062 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Lal1g0062 554 TIGRFAM PPR: pentatricopeptide repeat domain 273 305 IPR002885 -
Lal1g0062 554 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Lal1g0062 554 TIGRFAM PPR: pentatricopeptide repeat domain 142 169 IPR002885 -
Lal1g0062 554 TIGRFAM PPR: pentatricopeptide repeat domain 345 370 IPR002885 -
Lal1g0062 554 Pfam PPR repeat family 371 417 IPR002885 -
Lal1g0062 554 Pfam E motif 488 550 IPR046848 -
Lal1g0062 554 PANTHER OS07G0578800 PROTEIN-RELATED 1 550 IPR045215 GO:0003723|GO:0009451
Lal1g0062 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 273 302 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 37 64 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 446 469 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 244 270 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 142 162 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 345 370 IPR002885 -
Lal1g0062 554 Pfam PPR repeat 66 96 IPR002885 -
Lal1g0062 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Lal1g0062 554 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 550 - -
Lal1g0062 554 Gene3D Tetratricopeptide repeat domain 325 553 IPR011990 GO:0005515
Lal1g0062 554 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Lal1g0062 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Lal1g0062 554 SUPERFAMILY TPR-like 345 514 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0062 Lal-Chr1 464972 466636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0062 2 551 Glycoside Hydrolase AT3G49170 32.679 7.03e-97 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0062 - - vun:114174654 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0062 1 464972 466636 Lal1g0062 1 464972 466636 ECH