Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00078 ATGTCAAAGTGGAACGTATTTGAGTTTTTGCAGCAATCTCGTGTAAGTGGCAATGTCTCAGGCATTAAGAAACTCCATGCTCAGCTACTCAAAACAGGCATGCTCTTCCTCTCTCATCATCTCCACACCCAACTCATTGCGACATATGCGTCAACCCTCCCTAACCTTAACACCCTTCACTCACTAAACAATTTCTTCAAATGCATGAACTCCACCAACCCATTACACTTCAACGCCATAATATCTGATTTACGCCGCAAAGGTTTCCCCTTTCTCGCTCTAGCGTCCCTCTCCTTCATGCACACCAACGCTGTCCCCTTGGATACCTACTCTTTGTGCAGCACGTTGACCGCTTCCTCCAAAGTCAAAGATCTTGATTTTGGTAAGCAGATACACGCCCACGTGGCAAAATCAGGTTGGGCTTCTAGTGTCTTTCTGGGTAGTGCTCTCATTGATTTGTACTCCAAATTGTCGAATGTAAGAGATGCAACCCTTGTGTTCGATGAAATTCCTGAGAAGAACACTGTGTGTGCCAATGCACTTTTGAAGGGTTATGGCGAGGCCGGGCTGTGGGTTCAGAAACTTGAACTAGTTAGGAAGATGCACGTGTTGAAATTGAAGCATGATCACTTTACTCTATCAGCGGCTTTGCGTGCTTGCACTGGATTATCTGCTGTTGAAATGGGTAGGCAAGTGCATGGTTACTTGCTCCGTACGACACCTGATGTAGAGAGCGATGTGTTTCTCCAGAGCGCGTTGATTGAGATGTATGGCAAGTGTGGAATGGTGATAAAGGCTTGGCAAGTGTTCAAGTTGGTTGGGATGGAGATTAGAAAAGAAGTAAGAAGCAGAGATGTTGTGTTATGGACTTCAATGCTTGGTGTGTATGGTAGGAATGGGCATTCCAAGGAAGTGATTGATTTGTATAATGAGATGTTGGTTGAAGGAATCAGACCGGATGGAATAGCATTCCTGACAGTGATCTCAGCGTGTGGTCGCACTGGCCAAGTTCAAGAGGGTGTCAAGTATTTTGAGTCTATGGCTAATGAGTTCAAGTTAGATCCTGGTCCAGAACACTATAGCTGCCTAGTTGATTTACTATGTAGGGCTGGTGAATTGAAGAAGGCGTGGGAATTGCTGAATAAGACATTGAAAAAGGGAATGGGAAAGGGTAGTGTGTCAATGTGGGGGGCTCTACTGAGTGCTTGTGTGGATCGTGGGGATATAGAACTGGGGAAATTGGCAGCTGAGAGGGCTCTTGAGTTGGATCCTCAAAATGTTGGGATATGCATTATGCTGTCAAATCTGTATGCCCGTTTTGGTATGTGGGAGGAAATTGGACACTTGAGGGTATTGATCAATGCAAGTGGGCTAAGAAAAGATGTTGGATGCAGTTGGGTCCAGGTTACTAGTTGA 1416 0.4534 MSKWNVFEFLQQSRVSGNVSGIKKLHAQLLKTGMLFLSHHLHTQLIATYASTLPNLNTLHSLNNFFKCMNSTNPLHFNAIISDLRRKGFPFLALASLSFMHTNAVPLDTYSLCSTLTASSKVKDLDFGKQIHAHVAKSGWASSVFLGSALIDLYSKLSNVRDATLVFDEIPEKNTVCANALLKGYGEAGLWVQKLELVRKMHVLKLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTTPDVESDVFLQSALIEMYGKCGMVIKAWQVFKLVGMEIRKEVRSRDVVLWTSMLGVYGRNGHSKEVIDLYNEMLVEGIRPDGIAFLTVISACGRTGQVQEGVKYFESMANEFKLDPGPEHYSCLVDLLCRAGELKKAWELLNKTLKKGMGKGSVSMWGALLSACVDRGDIELGKLAAERALELDPQNVGICIMLSNLYARFGMWEEIGHLRVLINASGLRKDVGCSWVQVTS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00078 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Cca07g00078 471 Pfam PPR repeat family 284 331 IPR002885 -
Cca07g00078 471 Pfam PPR repeat 359 382 IPR002885 -
Cca07g00078 471 Gene3D Tetratricopeptide repeat domain 74 242 IPR011990 GO:0005515
Cca07g00078 471 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 20 467 - -
Cca07g00078 471 PANTHER OS02G0126500 PROTEIN 20 467 - -
Cca07g00078 471 Pfam PPR repeat 148 174 IPR002885 -
Cca07g00078 471 Pfam PPR repeat 251 271 IPR002885 -
Cca07g00078 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Cca07g00078 471 SUPERFAMILY TPR-like 332 441 IPR011990 GO:0005515
Cca07g00078 471 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Cca07g00078 471 TIGRFAM PPR: pentatricopeptide repeat domain 360 387 IPR002885 -
Cca07g00078 471 TIGRFAM PPR: pentatricopeptide repeat domain 324 347 IPR002885 -
Cca07g00078 471 Pfam E motif 408 468 IPR046848 -
Cca07g00078 471 Gene3D Tetratricopeptide repeat domain 243 352 IPR011990 GO:0005515
Cca07g00078 471 Gene3D Tetratricopeptide repeat domain 353 462 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00078 Cca-Chr7 1046803 1048394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00078 18 469 Glycoside Hydrolase AT3G49170 30.176 8.42e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00078 - - gmx:100798332 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00078 07 1046803 1048394 Cca07g00078 07 1046803 1048394 ECH