Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01626 ATGTCTGATATAGCCCAGTTTAAATCTACTCAAATATTTGAGTGTGTGATTCATTTTCTGCGACAATGTCATCAAACGAAGAATCTCTCATCCATCAAGAAGGTCCACTGTCATTTTCTCAGAACAGGGTTGCTGTTCTTCTCGCATGATTTCCACAGTGAACTGGTAATCACCTACACCGCATGCTATCCTAAGAACGACCTTCAAACGttaatcaaattcttcaaatgCATGAACTCCAGTAACCCATTACATTTCAATGTGATAATATCTGATTTTCGTCGAAAAGGTTTCCCCTTTCTTGCTCTTAGAACCTTCTCTTTCATGCACATGAATGGTCTTTCCTTGGATACGTACGCTCTGTGTAGCTCTTTGACTGCTGCTTCTGAAATTAAAGACGGTAAATTTGGAAGACAGATACATGCCGAGGTCGAAAAATCTGGTTTGTTATCTAGTGTTTTTGTGGGCAGTGCTCTGATCGATTTATACTCCAAGTTGTCGAATATAAAAGATGCAGATCttgtgtttgatgaaattccTATGAAGAATACCGTGTGTGCTAACGCACTTTTGTCAGGTTATGGAGAAGCAGGTTTATGGGTCCAGGAACTTGATCTAGTTAGGAAGATGCCTATGTTGAAATTGGATTATGATCACTTTACACTATCAGCAGCTTTACGCGCATGCACTGGACTATCTGCAATTGACATGGGTAAGCAACTGCATAATCATTTGCTGCGCAGGGAATGTAATATCGAAACTGATGTATTTCTGCATAGTGCACTGATTGAAATGTATGGCAAGTGTGGCCTGATAAAGAAGGCTTGGCAAGTCTTCAAGCTGGCTGGAATGGAAATCATAGGAGAAAGAAGCAGAGATGTTGTGTTATGGACTTCAATGCTTGGTGTCTATGGCAGAAATGGATATCACAAGGAAGTGATTGCTTTATTCAAAGAAATGCTGATGGAAGGTATTAGACCGGATGAGATAGCTTTTCTGACAGTGATCTCAGCTTGTAGTCGCACCGGCCAAGTTGAGCTTGGAATCCATTGCTTCGAATCCATGGCTAACGATTTTAACTTAGATCCTGTGGCTGAGCATTATAGCTGCCTAATTGATATGCTTTGTAGAGCTGGTGAGTTGCAGAGGGCATGGGAAATATTAAACAAGACACacaacaaaggaaaaggacACTGTATCATCTCCATGTGGGGAGCACTACTCAGTGCTTGTGTTGATCATGGAAATGTTGAGTTCGGTAAATTGGCAGCTGAGAGAGCTCTTGAGTTGGATCCTAGAAATGCTGGCATCTGCATCATGTTATCGAATCTATATGCCCGGTTTGATATGTGGGATGAGATTGAGCAGTTAAGGGTGTTGATGAAAGAAAGAGGTTTAAGGAAAGATGTTGGATGCAGTTGGATTCAGGTGACTAGTTG 1439 0.3996 MSDIAQFKSTQIFECVIHFLRQCHQTKNLSSIKKVHCHFLRTGLLFFSHDFHSELVITYTACYPKNDLQTLIKFFKCMNSSNPLHFNVIISDFRRKGFPFLALRTFSFMHMNGLSLDTYALCSSLTAASEIKDGKFGRQIHAEVEKSGLLSSVFVGSALIDLYSKLSNIKDADLVFDEIPMKNTVCANALLSGYGEAGLWVQELDLVRKMPMLKLDYDHFTLSAALRACTGLSAIDMGKQLHNHLLRRECNIETDVFLHSALIEMYGKCGLIKKAWQVFKLAGMEIIGERSRDVVLWTSMLGVYGRNGYHKEVIALFKEMLMEGIRPDEIAFLTVISACSRTGQVELGIHCFESMANDFNLDPVAEHYSCLIDMLCRAGELQRAWEILNKTHNKGKGHCIISMWGALLSACVDHGNVEFGKLAAERALELDPRNAGICIMLSNLYARFDMWDEIEQLRVLMKERGLRKDVGCSWIQVTS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01626 479 PANTHER OS02G0126500 PROTEIN 30 475 - -
Bva13g01626 479 TIGRFAM PPR: pentatricopeptide repeat domain 368 393 IPR002885 -
Bva13g01626 479 TIGRFAM PPR: pentatricopeptide repeat domain 295 329 IPR002885 -
Bva13g01626 479 Pfam PPR repeat family 292 340 IPR002885 -
Bva13g01626 479 Gene3D Tetratricopeptide repeat domain 259 433 IPR011990 GO:0005515
Bva13g01626 479 Gene3D Tetratricopeptide repeat domain 84 258 IPR011990 GO:0005515
Bva13g01626 479 Pfam PPR repeat 361 390 IPR002885 -
Bva13g01626 479 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 30 475 - -
Bva13g01626 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Bva13g01626 479 Pfam PPR repeat 186 211 IPR002885 -
Bva13g01626 479 Pfam PPR repeat 157 181 IPR002885 -
Bva13g01626 479 Pfam PPR repeat 260 280 IPR002885 -
Bva13g01626 479 Pfam E motif 414 476 IPR046848 -
Bva13g01626 479 SUPERFAMILY TPR-like 296 451 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01626 Bva-Chr13 9752600 9754591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01626 23 477 Glycoside Hydrolase AT3G49170 32.166 3.30e-73 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01626 - - gmx:100798332 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01626 13 9752600 9754591 Bva13g01626 13 9752600 9754591 ECH