Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0082 ATGGCCATCCGATTTCAGAGGATTATCCCTGCAAAGCAGATCCTGAGGCGCATTCTTCCATCTCCAGAGTCTACAAATGTGCCTAAAGGTCATGTTCCTGTCTATGTTGGGGAAGCTCAAAAGAAGAGATTTGTGATTCCAATTTCATACTTGAAGCATCCTTCATTCCAGAACTTGCTAAGTCAGGCTGAGGAAGAGTTCGGGTTTGATCATCCACTGGGTGGTCTCACAATCCCATGCAGAGAAGAAGCCTTCATTGATCTAACTTGCAGTTTGAATTGCTCATAA 288 0.441 MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLLSQAEEEFGFDHPLGGLTIPCREEAFIDLTCSLNCS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0082 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 19 92 IPR003676 GO:0009733
Vvi3g0082 95 Pfam Auxin responsive protein 21 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0082 Vvi-Chr3 866406 866693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0082 26 85 Calmodulin-binding Proteins AT3G43120 55.000 1.12e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0082 K14488 - vvi:100252008 196.823