Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0073 ATGGAGGTGATCAAGCATCCGGAGAGCTTTAGGTCTTTCAAGCATCCAAAGGGGTCTAAAAAGGGAGACAAAATGGAAGGCATCCAGAAGGTGAAGCAATACCTTCAACGTTATGGATACCTGAGCTCTACCCATTATTCCCAAACCAACACTGATGAGTTTGATGATGCCTTGGAGTCTGCCATTAAAGTCTTCCAGACCTTTTACCATCTGAACCACATCGAAATCCTAGACATTCTTGAGTCTCTGACAGCCACGCAGATGTCCAGGCCAAGATGTGGCATCCTAGACCACCCCTCTGGCTCAAACACTATCAACCCTCATGGCCATCACCATCTCAATATAGGCACCCATTATGCTTTCTACCCAGGAGACGCGAAATGGGGGTTTTTTTAA 396 0.4646 MEVIKHPESFRSFKHPKGSKKGDKMEGIQKVKQYLQRYGYLSSTHYSQTNTDEFDDALESAIKVFQTFYHLNHIEILDILESLTATQMSRPRCGILDHPSGSNTINPHGHHHLNIGTHYAFYPGDAKWGFF* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0073 131 Gene3D - 27 97 IPR036366 -
Vvi3g0073 131 MobiDBLite consensus disorder prediction 1 25 - -
Vvi3g0073 131 SUPERFAMILY PGBD-like 21 97 IPR036365 -
Vvi3g0073 131 Pfam Putative peptidoglycan binding domain 25 72 IPR002477 -
Vvi3g0073 131 PANTHER MATRIX METALLOPROTEINASE 10 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0073 Vvi-Chr3 815278 815673 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0073 - - vvi:104878773 280.796