Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0076 ATGGGGGCTGCTGTTCCGAACTTCACCTGGGTTCGACAGGAAACAAGTGCTAAACTCCGAGTTACGTTTTCCCACCATGATGGCCCTCGAGGAACCCTGGCTTCCGCCAGCCCATCATTTACTAACCCAACCATCATTTTCGATGAGGAAGAATCGTGGACGGTTGGTGCAGTTGCTGGTTCTGTCGATCTGGAAACTGTTGCTACTCATGAAATAGGTCATATTCTAGGACTTGCGCATGCAACCATTACTACTGGAGTGGCCATGACTTTGGCTTAG 279 0.4982 MGAAVPNFTWVRQETSAKLRVTFSHHDGPRGTLASASPSFTNPTIIFDEEESWTVGAVAGSVDLETVATHEIGHILGLAHATITTGVAMTLA* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0076 92 Gene3D Collagenase (Catalytic Domain) 3 90 IPR024079 GO:0008237
Vvi3g0076 92 Pfam Matrixin 24 85 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi3g0076 92 PANTHER MATRIX METALLOPROTEINASE 11 83 - -
Vvi3g0076 92 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 5 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0076 Vvi-Chr3 849287 849565 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0076 - - vvi:104878771 113.62