Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0075 ATGGAGCCTAGAGTTTCTCTCATGCTCTCCTTCATTCTTTCTTCTCTCCTCCTCCCATTCCTTTCTCAGGCAACTTCCTCAGGCCCCTCACGCGTCGGGCCTTTCGGGCATCTGGAGAGCTTTGGGTCTTTTAACCATCTGGAGGGATCCAAAAAGGGAGACAAAAGGGAAGGCATCCAGAAGGTGAAGCAGTACCTTCAACGCTATGGCTACTTGAGCTCTACCCATTATTCCCAGATGGGTAGTGATGATTTCGACGATGCCTTGGAGTCTTCCCTCAAAGCCTTTCAGACCTTCTACCATCTGAACTCCACTGGAACCCTAGACGCCCCAACAGCCACGCTGATGTCCAAGCCAAGATGTGGGTTCCCGGACCACCCCCCAAACTCAAACAGTACTATCAACCCTAATTATGCTTATATATTGAGCGTAAAATGGCCCCCTGATCAGATGCATATCCACTACGTAGTGTTCCCTGGCTCCCAACCTGAGCAACCAATTACAAACGGTTTCAACGCATGGGCTGCTGTTTCGAAGTTCACCTTCGAAAGGGTTCGAGAGGAATCACGTGCTGTACTCCGAGTTACGTTTGGCCACCGTGATGGCCCTGGAGGAACCCTGGGTTCCGCCGCCCCATCATATACTGACGCAACCATCATTTTGGATGAGGACGATTCGTGGACGGTTGGTGCAGTTCCTGGTTCTCACGATCTGGAAACTGTTGTTACTCATGAAATAGGTCATATTCTAGGACTTGCACACAGCCAATATAAGGAGGCCCTCATGTACGCATTAATTGATGATGGAGTGATCAAGAAATTGGCTCAGGATGATATCGATGGCATTAGAGTTAGATACAGCTGA 864 0.4942 MEPRVSLMLSFILSSLLLPFLSQATSSGPSRVGPFGHLESFGSFNHLEGSKKGDKREGIQKVKQYLQRYGYLSSTHYSQMGSDDFDDALESSLKAFQTFYHLNSTGTLDAPTATLMSKPRCGFPDHPPNSNSTINPNYAYILSVKWPPDQMHIHYVVFPGSQPEQPITNGFNAWAAVSKFTFERVREESRAVLRVTFGHRDGPGGTLGSAAPSYTDATIILDEDDSWTVGAVPGSHDLETVVTHEIGHILGLAHSQYKEALMYALIDDGVIKKLAQDDIDGIRVRYS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0075 287 Pfam Putative peptidoglycan binding domain 56 116 IPR002477 -
Vvi3g0075 287 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0075 287 PRINTS Matrixin signature 167 182 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0075 287 PRINTS Matrixin signature 274 287 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0075 287 PRINTS Matrixin signature 241 266 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0075 287 SMART col_5 142 287 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vvi3g0075 287 Gene3D Collagenase (Catalytic Domain) 49 287 IPR024079 GO:0008237
Vvi3g0075 287 PANTHER MATRIX METALLOPROTEINASE 39 286 - -
Vvi3g0075 287 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 145 286 - -
Vvi3g0075 287 Pfam Matrixin 160 286 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi3g0075 287 SUPERFAMILY PGBD-like 52 125 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0075 Vvi-Chr3 847550 848413 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0075 - - vvi:104878771 571.622