Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0078 ATGTTGGTAAATCTGTTACGAGGGTATGCGCATGACTTTGATTTGCTGAGGGGAAGAGCAATTCACGCTACATTCATCAAAGCCTCTTTTCCTGTAACTCTTTTTCTTCATAACCATTTACTTAACTTTTACCTCAAAATTAAAGACCTTCCTTCTGCTCTCAAACTGTTTGATGAAATGCCCCACAAGAATGTTGTCTCATGGTCCGCTCTCATGGCCGGTTTTATCCATAATGCATCACCTTCCCAATCACTTTCTTTATTCTCTCGTATGCATCATGAAGGACTCACTATACCGAACGAGTTCACGCTTGTCAGTGCCCTCCACGCTTCCTCGTTAACTCAAAATGACACTACTCATGTGCCTTATCAGATTTATTCCTTGATTGTGCGCTTAGGACTCGACTCTAATATCTTCTTACTCAATGCATTTTTGTCTGCCTTAGTCAAGCATGGTAAATTGGATGAAGCATTGCAAGTTTTTGAGACAAGTGTCGATAAGGATATCGTGTCGTGGAATACCATGATGGCGGGTTACTTGCAGTTTTCTTGCGAGGACGTTCCTGGATTTTGGTGTTGCATGAATAATAACGATATAAAACCTGATAACTTCACATTTGCTACCGCCCTCACCGGGTTGGCGGCTCTATCTCATTCGCATTTTCGAATGGGATTGCAAGTTCATGGATGCCTTGTCAAGACTGGTTATGGAGATGATATGTGTGTAGGGAATTCTCTAGTTGATATGTACCTAAAAAATAAAAAATTGGTGGAGGGTTTTAGAGCTTTTGATGAGATGCCTAACAAAGATGTGTGCTCTTGGTCCCAGATGGCTGCCGGATGTCTACAATGCGAGGAGCCAAGGAAGGCGCTTGATGTCATTGCACGAATGAGGAAAATTGGTGTAAAGCCGAATAAATTTACCTTGGCAACTGCCCTAAATGCTTGTGCGACTTTGGCTTCGCTAGAGGAAGGAAAACAAGTTCATGGCTTGAGGACTAAACTTGGAAGTGAAATTGATTTATGTGTTGATAATGCGCTCCTTGACATGTATGCAAAATGTGGATGCATGGATAGTGCATGGGGTGTCTTTAGATCAATGAGTTCCCGTACTGTCATCTCATGGACATCGATGATAATGGCATGTGCTCAGAATGGGCAATCCAGAGAAGCTCTTCAAATTTTCGATGAAATGAGGAAGACAAGTGTAGAGCCGAATTACATCACCTTCATTTGTGTTCTTTATGCATGTAGTCAAGGTGGGTTTGTAAATGAAGGATGGACATATTTTTCCTCTATGGCCAAGGACTATGGAATCTTCCCCGGAGAAGATCACTATGCTTGTATGGTGAATATCCTTGGTCGAGCTGGGCTTATTAAAGAAGCCGAGGAGTTAATCCTAAGAATGCCATTTAAGCCAGGTGTGCTAGTTTGGCAAACTTTGCTCAGTGCTTGTCAACTTCACGGTGATGTGGAAACAGGGAAACTTGCAGCACAACATGCCATACGACAGGACCAGAAAGATCCATCAACCTATTTATTATTGTCTAACATGTTTGCTGAATTGAGCAATTGGGATGGTGTGGTGATTCTGAGAGAACTAATGGAGACAAGGGATGTAAAGAAAGTACCCGGAACTAGTTGGATTGAAATCGAAAAGAATTAA 1665 0.4198 MLVNLLRGYAHDFDLLRGRAIHATFIKASFPVTLFLHNHLLNFYLKIKDLPSALKLFDEMPHKNVVSWSALMAGFIHNASPSQSLSLFSRMHHEGLTIPNEFTLVSALHASSLTQNDTTHVPYQIYSLIVRLGLDSNIFLLNAFLSALVKHGKLDEALQVFETSVDKDIVSWNTMMAGYLQFSCEDVPGFWCCMNNNDIKPDNFTFATALTGLAALSHSHFRMGLQVHGCLVKTGYGDDMCVGNSLVDMYLKNKKLVEGFRAFDEMPNKDVCSWSQMAAGCLQCEEPRKALDVIARMRKIGVKPNKFTLATALNACATLASLEEGKQVHGLRTKLGSEIDLCVDNALLDMYAKCGCMDSAWGVFRSMSSRTVISWTSMIMACAQNGQSREALQIFDEMRKTSVEPNYITFICVLYACSQGGFVNEGWTYFSSMAKDYGIFPGEDHYACMVNILGRAGLIKEAEELILRMPFKPGVLVWQTLLSACQLHGDVETGKLAAQHAIRQDQKDPSTYLLLSNMFAELSNWDGVVILRELMETRDVKKVPGTSWIEIEKN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0078 554 Pfam PPR repeat 66 96 IPR002885 -
Lan13g0078 554 Pfam PPR repeat 273 302 IPR002885 -
Lan13g0078 554 Pfam PPR repeat 345 370 IPR002885 -
Lan13g0078 554 Pfam PPR repeat 37 64 IPR002885 -
Lan13g0078 554 Pfam PPR repeat 244 270 IPR002885 -
Lan13g0078 554 Pfam PPR repeat 142 162 IPR002885 -
Lan13g0078 554 Pfam PPR repeat 446 469 IPR002885 -
Lan13g0078 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lan13g0078 554 Gene3D Tetratricopeptide repeat domain 1 117 IPR011990 GO:0005515
Lan13g0078 554 Gene3D Tetratricopeptide repeat domain 118 216 IPR011990 GO:0005515
Lan13g0078 554 Gene3D Tetratricopeptide repeat domain 217 330 IPR011990 GO:0005515
Lan13g0078 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Lan13g0078 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Lan13g0078 554 Pfam E motif 488 550 IPR046848 -
Lan13g0078 554 PANTHER OS07G0578800 PROTEIN-RELATED 3 550 IPR045215 GO:0003723|GO:0009451
Lan13g0078 554 Gene3D Tetratricopeptide repeat domain 342 553 IPR011990 GO:0005515
Lan13g0078 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Lan13g0078 554 TIGRFAM PPR: pentatricopeptide repeat domain 142 168 IPR002885 -
Lan13g0078 554 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Lan13g0078 554 TIGRFAM PPR: pentatricopeptide repeat domain 345 370 IPR002885 -
Lan13g0078 554 Pfam PPR repeat family 371 417 IPR002885 -
Lan13g0078 554 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0078 Lan-Chr13 450109 451773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0078 40 551 Glycoside Hydrolase AT3G49170 34.549 8.06e-98 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0078 - - vun:114174654 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0078 13 450109 451773 Lan13g0078 13 450109 451773 ECH