Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2357 ATGTCCAACTCAATTATTCAATTCTTGCACCAATGTCATGTAACTAAAAACCTCTCAGCCATAAAGAAACTCCATGGCAATCTACTCAGAACAGGCACACTCTTTTTCTTGCATGATTTACACACCAATCTCATTGCTGCATACGCCACATGCCTTCCTAAGAACCACCTTCAAACACTGCACAATTTCTTCAAATGCATGAACTCCACCAACCCATTACACTTCAATGTCATCATATCTAATTTTTGTCGCAAAGGTTTCCCCTTCCTTGCTCTCACCGCCTTCTCCTTCATGCACACCAACAATGTTCCCTTGGATACATACGCTTTATGCAGCACCTTAACTGCTTCATCCAGAGTCAATGATGTTAACTTTGGGAAACAGATACATGCCCACGTGGGGAAATTGGGCTGGTCTTCTAGTGTGTTTGTGGGTAGTGCTCTCGTTGATTTGTACTCGAAACTGTCAAGTGTAAAAGATGCAGCCCTTGTGTTTGATGAAATTCCTGAGAAGAATACTGTTTGTGCTAATGCGCTTTTATCGGGCTATGGCGAGGCTGGGCTATGGGCTCAGGGGCTTGAACTTGTTAGGAAGATGCCAGTGTTGAGATTGAAGTATGATCAGTTTACATTATCGGCAGCTTTACGCGCATGCACTGGTTTATCTGCTGTTGAATTGGGTCGGCAACTGCATAGTTATGTGCTCCGCACGACGCATGATATAGAGAGTGATGTGTTTCTGCAGAGCTCGCTAATTGAAATGTATGGCAAGTGTGGCCTGGTGAAGAAGGCTCAGCAAGTCTTCAAGCTGGATGGAGTAGAGAGCAGAAATGAAAGAAGCAGAGATGTTGTGTTATGGACTTCAATGCTTGGTGTGTATGGTAGAAATGGAAAGTACAAGGAAGTGATTGATTTGTTTAAGGAAATGTTGGAGGAAGGAATAAGACCAGATGGAATAGCATTTCTGACAGTAATCTCAGCTTGTGGTCACACTGGCCAAGTACATGCTGGTGTTAAGTATTTTGAATCTATGTCTAATGAATTTAAGTTGAATCCTGGTCCAGAGCATTATAGCTGCCTAGTTGATTTGCTTTGTAGAGCTGGTGAATTGCAGAAGGCATGGGAATTGCTGAATCAGACACTCTATAAAGGAATGGGAAATTGTACAATCTCAATGTGGGGGGCTCTACTCAATGCTTGTGTGGATTGTGGGAATATAGAGCTGGGTAAATTGGCTGGTCAGAGGGCTCTTGAGTTAGATCCCCATAATGCTGGGATCTGCATTTTGCTATCAAACCTTTATGCCAGGTTTGGTATGTGGGATGAGATTGGACACTTGAGGGTTGTGATCAAAGAAAGAGGGTTAAGAAAAGATGTTGGATGCAGTTGGGTTCAGGTGACAAGTTGA 1407 0.4307 MSNSIIQFLHQCHVTKNLSAIKKLHGNLLRTGTLFFLHDLHTNLIAAYATCLPKNHLQTLHNFFKCMNSTNPLHFNVIISNFCRKGFPFLALTAFSFMHTNNVPLDTYALCSTLTASSRVNDVNFGKQIHAHVGKLGWSSSVFVGSALVDLYSKLSSVKDAALVFDEIPEKNTVCANALLSGYGEAGLWAQGLELVRKMPVLRLKYDQFTLSAALRACTGLSAVELGRQLHSYVLRTTHDIESDVFLQSSLIEMYGKCGLVKKAQQVFKLDGVESRNERSRDVVLWTSMLGVYGRNGKYKEVIDLFKEMLEEGIRPDGIAFLTVISACGHTGQVHAGVKYFESMSNEFKLNPGPEHYSCLVDLLCRAGELQKAWELLNQTLYKGMGNCTISMWGALLNACVDCGNIELGKLAGQRALELDPHNAGICILLSNLYARFGMWDEIGHLRVVIKERGLRKDVGCSWVQVTS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2357 468 Pfam PPR repeat 175 200 IPR002885 -
Lja1g2357 468 Pfam PPR repeat 249 269 IPR002885 -
Lja1g2357 468 Pfam PPR repeat 75 102 IPR002885 -
Lja1g2357 468 Pfam PPR repeat 356 381 IPR002885 -
Lja1g2357 468 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Lja1g2357 468 TIGRFAM PPR: pentatricopeptide repeat domain 357 379 IPR002885 -
Lja1g2357 468 Gene3D Tetratricopeptide repeat domain 249 436 IPR011990 GO:0005515
Lja1g2357 468 Gene3D Tetratricopeptide repeat domain 72 245 IPR011990 GO:0005515
Lja1g2357 468 Pfam E motif 405 465 IPR046848 -
Lja1g2357 468 Pfam PPR repeat family 281 328 IPR002885 -
Lja1g2357 468 SUPERFAMILY TPR-like 293 442 IPR011990 GO:0005515
Lja1g2357 468 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 465 - -
Lja1g2357 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lja1g2357 468 PANTHER - 6 465 - -
Lja1g2357 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2357 Lja-Chr1 27276433 27277839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2357 12 466 Glycoside Hydrolase AT3G49170 31.947 7.18e-75 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2357 - - gmx:100798332 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2357 1 27276433 27277839 Lja1g2357 1 27276433 27277839 ECH