Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0065 ATGTCGACGCCCAACGTATTTGAGTTTTTGCAGCAATCTGGTGTAAGTGGCAATGTCTCAGCCATTAAGAAACTCCATGGTCAGCTACTGAGAACAGGCATGCTCTTCCTCTCCCATCATCTCCACACCCAACTCATTGCCACCTACGCATGCCTCCCACACAACACCCGTCAATCCCTCAAGAACTTCTTCAAATGCATGAACTCCACCAACCCATTACACTTCAACGCCATTATATCCGATTTCTGTCGCAAAGGTTTCCCCTTTCTCGCTCTCGCTTCCTTATCCTTCATGCACACCAACGCTGTTCCCTTGGATACCTACGCTTTGTGTAGCACGTTGACCGCCTCCTCCAAAGTCAAAGATCTTAATTTGGGGAAGCAGATACACGCCCATGTGGGGAAATCAGGTTGGTCTTCTAGCGTGTTTGTGGGTAGTGCTCTCATTGATTTGTACTCCAAATTATCGAATGTGAAAGATGCAGCCCACGTGTTCGATGAAATTCCTGAGAAGAACACTGTGTGTGCCAATGCACTTTTGTCGGGTTATGGCGAGGCCGGCCTCTGGGTTCAGGAACTTGACCTGGTTAGGAAGATGCCCGTGTTGAAATTGAAGCATGATCACTTTACTTTATCAGCAGCTTTGCGTGCATGCACTGGATTATCCGCTGTTGAAATGGGTAAGCAAGTGCATGGTTGCTTGCTCCGTACGACACCTGATGTGGAGAGTGATGCTTTTCTACAGAGTGCGTTGATTGAGATGTATGGCAAGTGTGGATTGGTAAAGAAGGCTTGGCAAGTGTTTAAGTTGGTTGGGACGGAGACTAGAAAAGAAGTAAGAAGCAGAGACGTTGTGTTGTGGACTTCGATGCTTGGTGTGTATGGTAGGAATGGGCATTACAAGGAAGTAATTGATTTGTATAATGAGATGTTGGTGGAAGGAATCAAACCGGATGGAATAGCATTCTTGACAGTGATCTCAGCTTGTGGTCACACTGGCCAAGTTCATGATGGTGTCAAGTATTTTGAGTCTATGGGCAATGATTTCAAGTTAGATCCTGGTCCAGAACATTACAGCTGCCTGGTTGATCTGCTTTGTAGGGCTGGTGAATTGCAGAAGGCGTGGGAATTGCTGAATGAGACACTCTATAAGGGAATGGGAAATTGTACTGTGTCAATGTGGGGAGCACTACTCAGTGCTTGTGTGGATGGTGGGGATTTAGAGCTGGGCAAATTGGCAGCTCAGAGGGCACTTGAGTTAGATCCTCAAAATGTTGGGATATGCATCATGCTATCAAATCTGTATGCCCGGTTTGGTATGTGGGAGGAGACTGGTCACTTGAGGGTATTGATCAAAGCAAGAGGGCTAAGAAAAGATGTTGGATGCAGTTGGGTTCAGGTGACTGACTAG 1410 0.466 MSTPNVFEFLQQSGVSGNVSAIKKLHGQLLRTGMLFLSHHLHTQLIATYACLPHNTRQSLKNFFKCMNSTNPLHFNAIISDFCRKGFPFLALASLSFMHTNAVPLDTYALCSTLTASSKVKDLNLGKQIHAHVGKSGWSSSVFVGSALIDLYSKLSNVKDAAHVFDEIPEKNTVCANALLSGYGEAGLWVQELDLVRKMPVLKLKHDHFTLSAALRACTGLSAVEMGKQVHGCLLRTTPDVESDAFLQSALIEMYGKCGLVKKAWQVFKLVGTETRKEVRSRDVVLWTSMLGVYGRNGHYKEVIDLYNEMLVEGIKPDGIAFLTVISACGHTGQVHDGVKYFESMGNDFKLDPGPEHYSCLVDLLCRAGELQKAWELLNETLYKGMGNCTVSMWGALLSACVDGGDLELGKLAAQRALELDPQNVGICIMLSNLYARFGMWEETGHLRVLIKARGLRKDVGCSWVQVTD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0065 469 Pfam PPR repeat family 282 329 IPR002885 -
Aed9g0065 469 TIGRFAM PPR: pentatricopeptide repeat domain 358 380 IPR002885 -
Aed9g0065 469 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Aed9g0065 469 Pfam PPR repeat 146 172 IPR002885 -
Aed9g0065 469 Pfam PPR repeat 249 269 IPR002885 -
Aed9g0065 469 Pfam PPR repeat 357 385 IPR002885 -
Aed9g0065 469 Pfam PPR repeat 175 200 IPR002885 -
Aed9g0065 469 PANTHER OS02G0126500 PROTEIN 20 465 - -
Aed9g0065 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Aed9g0065 469 SUPERFAMILY TPR-like 342 443 IPR011990 GO:0005515
Aed9g0065 469 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 20 465 - -
Aed9g0065 469 Pfam E motif 406 466 IPR046848 -
Aed9g0065 469 Gene3D Tetratricopeptide repeat domain 73 243 IPR011990 GO:0005515
Aed9g0065 469 Gene3D Tetratricopeptide repeat domain 244 464 IPR011990 GO:0005515
Aed9g0065 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0065 Aed-Chr9 457280 458689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0065 18 469 Glycoside Hydrolase AT3G49170 31.429 4.91e-72 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0065 - - gmx:100798332 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0065 9 457280 458689 Aed9g0065 9 457280 458689 ECH