Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0078 ATGCATACCAATGGGGTTCCTTTAGATACATATAGTTTTTGTTGTTCTTTAGTGGCTTCATGTTCCATGAAAAACGTTAAATTTGGTGCACAGATACATGCCCGTGTTGAAAAATCAGGTTGGTTGTCAAGTGTTTTTGTGGGTAGTGCTCTGGTTGATATGTATGCTAAATTGTCGCTTATCAATGACGCAGCAATGGTGTTCGATGAAATTCCTGTCAAGAACACTGTTTGTGCAAATGCACTATTATCAGGTTATGGTGAGGCTAAGCTGTGGGTTGAAGGGCTTGACTTCGTTCGAAAGATGCGTTCATTGAATTTGAATTGTGATCATTTCACATTGTCAGCAATGTTACGCTCATGTGCTGGTCTGTCCGCAATTGAATTGGGTAGGCAGGTTCATGGGAGTGTGATCCGTAAGGTTTCTGATGTGGAAGCTGATGTCTTTTTGCAGAGTTCTTTGATTGAAATGTATGGTAAGTGTGGCTCAGTGGAGAAGGCTTGGCAAGTCTTCAATTTGGCAGGCTTTGGATACAAGGGGGAGAGAAAGAGAGATGTTGTTCTGTGGACCTCAATGCTTGCTGTATGTGGTAGAAATGGGCATTTTGAAAAAGTAATTGAGTTGTACAAAGAGATGTTGAGGGAAGGGATAAGGCCAGATGGGGTGGCATTTGTGACTGTCATCTCTGCTTGTGGACACACTGGCCATGTGAAACTTGGAATTAAGTATTTTGAGTCCATGGTCAGTGACTTTGGATTGGAACCTGGCCCAGAGCATTACAGTTGTGTAGTTGATTTGCTTTGCAGGGCTGGTGAGTTGGAGAAGGCATGGAAGATGGTGAATGAGATGACACTTAAAGAGAATGGCAGTTACAGTATCTCAATGTGGGGGGCTTTGCTTAATGCTTGCAACGAATTTGGAAATGTTGAATTGGGTAAATTGGCTGCTCACAAGGCACTTGAGATGGATCCTCATAATGTCGGGATCTATGTTCTGTTATCAAATATGTATGCTAAATTCAGTATGTGGGATGAGATTGGGCAGCTGAGGGAGTTGATGAAGGAAAGTGGTTTAAAGAAAGATGTTGGACGCAGTTGGATAGAGATTACAAGTTGA 1116 0.4229 MHTNGVPLDTYSFCCSLVASCSMKNVKFGAQIHARVEKSGWLSSVFVGSALVDMYAKLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLNCDHFTLSAMLRSCAGLSAIELGRQVHGSVIRKVSDVEADVFLQSSLIEMYGKCGSVEKAWQVFNLAGFGYKGERKRDVVLWTSMLAVCGRNGHFEKVIELYKEMLREGIRPDGVAFVTVISACGHTGHVKLGIKYFESMVSDFGLEPGPEHYSCVVDLLCRAGELEKAWKMVNEMTLKENGSYSISMWGALLNACNEFGNVELGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKKDVGRSWIEITS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0078 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Vvi3g0078 371 Gene3D Tetratricopeptide repeat domain 1 144 IPR011990 GO:0005515
Vvi3g0078 371 FunFam Pentatricopeptide repeat-containing protein 1 140 - -
Vvi3g0078 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 286 IPR002885 -
Vvi3g0078 371 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 103 IPR046960 GO:0003723|GO:0009451
Vvi3g0078 371 Pfam PPR repeat 252 284 IPR002885 -
Vvi3g0078 371 Pfam PPR repeat 152 172 IPR002885 -
Vvi3g0078 371 Pfam PPR repeat 78 106 IPR002885 -
Vvi3g0078 371 Gene3D Tetratricopeptide repeat domain 145 325 IPR011990 GO:0005515
Vvi3g0078 371 FunFam Pentatricopeptide repeat-containing protein chloroplastic 241 367 - -
Vvi3g0078 371 FunFam Uncharacterized protein 141 240 - -
Vvi3g0078 371 Pfam PPR repeat family 184 231 IPR002885 -
Vvi3g0078 371 NCBIfam pentatricopeptide repeat 78 110 IPR002885 -
Vvi3g0078 371 NCBIfam pentatricopeptide repeat 260 283 IPR002885 -
Vvi3g0078 371 NCBIfam pentatricopeptide repeat 223 255 IPR002885 -
Vvi3g0078 371 NCBIfam pentatricopeptide repeat 187 220 IPR002885 -
Vvi3g0078 371 NCBIfam pentatricopeptide repeat 152 173 IPR002885 -
Vvi3g0078 371 SUPERFAMILY TPR-like 157 345 IPR011990 GO:0005515
Vvi3g0078 371 Pfam E motif 307 368 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0078 Vvi-Chr3 856872 857987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0078 1 369 Glycoside Hydrolase AT3G49170 33.514 6.41e-68 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0078 - - vri:117910296 748.429