Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0842 ATGCACGTCAATGGAGTTCCGTTCAATACGTATACTCTGTGTAGCTCTCTGACGGCTTCCGCTAGAGTTAGGGATGTTAGGTTTGGAAAACAGATACACGCCCTCGTGGGGAAGTCAGGTTGGTCTTCTAGTGTTTTTGTGGGTAGTGCTCTCGTTGTTCTGTACTCAAAATTGTCAAATGTGAAAGATGCAGCTCTGGTGTTCGATGAAATTCCTCAAAAGAACACTGTATGTGTGAATGCACTTTTGGTAGGTTATGGTGAGGCTGGGTTGTGGGTAGAGGAACTTGAACTAATTAGGAAGATGCCCATGTTGAATTTGAAGTATGATCAGTTCACATTATCGGCAGCTTTACGGGCAAGCACTGGATTATCTGCTGTAGAAATGGGTAGACAAGTGCATAGTTATTTGCTTCGTACAGTACACGATCTAGAAAGTGATGTGTTTCTCCAGAGTGCTTTAGTTGAGATGTATGGAAAGTGTGGGCTGGTAAAGAAGGCTTGGCAGGTATTCGAGTTGACTGGAATGCAAATTAGAGGAGAAAGAAGTAGAGATATTGTGTTATGTACTTCAATGCTTGGTGTATATGGTAGAAACGGCTTTTATGAGGAAGTGATTTCTCTATACAATGAAATGTTAGTGGAAGGAATCAGACCAGATGGGATTGCAATTCTGACAGTGATCTCTGCTTGCAGTAGAACCGGCCAAGTACAAGATGGAATCAAGTATTTTGAATCTATGTTTAGTGATTTTAAGTTAGATCCTGGTCCAGAGCATTATAGCTGCCTAGTTGATTTGCTTTGTAGGGCTGGTGAATTGCAGAAGGCATGGGAACTACTGAATGAGAAACACTACAAGGAAATGGGGAATTCTATCATATCCATGTGGGGAGCACTACTTAGTGCTTGTGTCGATCGTGGGAATATCGAGCTGGGAAAATTGGCGGCTCAGAGGGCTCTTGAGTTGGATCCCCAGAATGTTGGGATTTGCATTATGCTATCGAACCTATATGCACGATCCGGGATGTGGGATGagattgggaagttgagggtgTTGATTAGAGAAAGAGGGTTGAAAAAAGATGTTGGCTGCAGTTGGGTTCAGGTGACAAGTTGA 1116 0.4211 MHVNGVPFNTYTLCSSLTASARVRDVRFGKQIHALVGKSGWSSSVFVGSALVVLYSKLSNVKDAALVFDEIPQKNTVCVNALLVGYGEAGLWVEELELIRKMPMLNLKYDQFTLSAALRASTGLSAVEMGRQVHSYLLRTVHDLESDVFLQSALVEMYGKCGLVKKAWQVFELTGMQIRGERSRDIVLCTSMLGVYGRNGFYEEVISLYNEMLVEGIRPDGIAILTVISACSRTGQVQDGIKYFESMFSDFKLDPGPEHYSCLVDLLCRAGELQKAWELLNEKHYKEMGNSIISMWGALLSACVDRGNIELGKLAAQRALELDPQNVGICIMLSNLYARSGMWDEIGKLRVLIRERGLKKDVGCSWVQVTS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0842 371 Gene3D Tetratricopeptide repeat domain 251 367 IPR011990 GO:0005515
Sto2g0842 371 Gene3D Tetratricopeptide repeat domain 130 250 IPR011990 GO:0005515
Sto2g0842 371 Pfam PPR repeat 259 282 IPR002885 -
Sto2g0842 371 Pfam E motif 308 368 IPR046848 -
Sto2g0842 371 Pfam PPR repeat 153 172 IPR002885 -
Sto2g0842 371 Pfam PPR repeat 226 248 IPR002885 -
Sto2g0842 371 Pfam PPR repeat 187 217 IPR002885 -
Sto2g0842 371 Pfam PPR repeat 77 104 IPR002885 -
Sto2g0842 371 PANTHER OS02G0126500 PROTEIN 1 367 - -
Sto2g0842 371 TIGRFAM PPR: pentatricopeptide repeat domain 260 282 IPR002885 -
Sto2g0842 371 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Sto2g0842 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Sto2g0842 371 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 367 - -
Sto2g0842 371 Gene3D Tetratricopeptide repeat domain 1 129 IPR011990 GO:0005515
Sto2g0842 371 SUPERFAMILY TPR-like 231 345 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0842 Sto-Chr2 7343162 7344277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0842 9 369 Glycoside Hydrolase AT3G49170 33.241 8.36e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0842 - - aprc:113865303 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0842 2 7343162 7344277 Sto2g0842 2 7343162 7344277 ECH