Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0074 ATGGCGCATAGACTTTCTCTCCTGCTCTCCTTCCTTCTTTCTTCTCTCCTCCTCCTCCCTTTCCTTTCTCAGGCAACTTCCTCAGGCCCCTCACGCGTCGGGCCTTTCAGACATCTGGAGAGCTTTGGATCTTTTAACCATCTTGAGGGATCCAAAAAGGGAGACAAAAGGGAAGGCATCCAGAAGGTGAAACAGTACCTTCAACGCTATGGCTACATAAGCTCTACCCATTATTCCCAAATGGGTAGTGATGATTTCAACGACGCCTTGGAGTCTTCCCTCAAAGCCTTTCAGACCTTCTACCATCTGAACTCCACTGGAACCCTAGACGCCGCAACAGCCACGCTGATGTCCAGGCCAAGATATGCATATCCACTACATAGTGTTCCCTGGCTCCCACCTGAGCAACCAATTACAAACGGTTTCGACGCATGGGCTGCTGTTTCCAAGTTCACCTTCGAAAGGGTTCGAGAGGAATCACGTGCTAAACTCCGAGTTACGTTTACCCAACGTGATGGCCCTGGAGGAACCGTGGCTTCCACCAAAACATCATTGACTGATCCAACCATCCATTTCGATGAGGAAGAATCGTGGTCGGTCGGTGCAGTTGATGGTTCTGTCGATCTGAAAAGTGTTGCTACGCAGGAAATAGGTCATACTCTAGGACTTGCGCACAGCCAAGTTGAGGAAGCCGTCATGTACGCAACCTTTAGCTATGGAGTGACCAAGAAATTGGCTCAGGATGATATCGATGGCATTAGAGCTAAATACAGCACTTCATGA 783 0.4917 MAHRLSLLLSFLLSSLLLLPFLSQATSSGPSRVGPFRHLESFGSFNHLEGSKKGDKREGIQKVKQYLQRYGYISSTHYSQMGSDDFNDALESSLKAFQTFYHLNSTGTLDAATATLMSRPRYAYPLHSVPWLPPEQPITNGFDAWAAVSKFTFERVREESRAKLRVTFTQRDGPGGTVASTKTSLTDPTIHFDEEESWSVGAVDGSVDLKSVATQEIGHTLGLAHSQVEEAVMYATFSYGVTKKLAQDDIDGIRAKYSTS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0074 260 Gene3D Collagenase (Catalytic Domain) 124 260 IPR024079 GO:0008237
Vvi3g0074 260 Gene3D - 59 123 IPR036366 -
Vvi3g0074 260 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 59 255 - -
Vvi3g0074 260 Pfam Matrixin 136 257 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi3g0074 260 Pfam Putative peptidoglycan binding domain 57 117 IPR002477 -
Vvi3g0074 260 PRINTS Matrixin signature 138 153 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0074 260 PRINTS Matrixin signature 212 237 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0074 260 PRINTS Matrixin signature 245 258 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi3g0074 260 SMART col_5 118 259 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vvi3g0074 260 PANTHER MATRIX METALLOPROTEINASE 40 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0074 Vvi-Chr3 819845 820716 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0074 - - vvi:104878771 377.867