Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g0593 Acco04g2730 . Accr8g00032 . Adu01g03290 . . Aed6g1569 Aev01g2116 . Ahy11g1895 . Aip01g02096 . Alju06g2692 . Amo11g2227 . . Apr9g3008 Arst1g04245 . . . Bisa08g1835 . Bva06g01228 . Car07g00951 . . Cca11g01950 Dere03g0913 . Dod05g1732 . . . Glsi02g0833 . . . . Gma17g00936 . . . . . . Lal14g1912 . . . . . . . . . . . Lasa4g03266 . Lele21g1890 Lele22g1860 Lele23g0124 Lele24g1808 . . . . . . Mal5g4243 . Mepo1g01269 . Mesa29g01299 . Mibi09g0140 . Mtr4g3923 . Phac3g02923 . Phco8g01332 . Prci4g3028 . Psa4g1201 . Pste6g02547 . . . . . Pumo4g01294 . Pvu3g1971 . Rops2g03896 . . . Spst3g04690 . . Ssu6g1269 Sto3g1544 . Tpr5g3031 . Trre15g04202 . Tsu04g03689 . Vian1g00767 . Vifa4g03348 . Vimu7g00790 . Viun3g04574 . Vivi1g01941 . . Vra7g1886
Vvi17g0594 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0595 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0596 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0597 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva05g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto3g1545 . . . . . . . . . . . . . . . . . . .
Vvi17g0598 . . . . . . . . . . . . . . . . . . Apr1g0914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0599 . . . . . . Aed10g1043 . . . . . . . . . . . . . . . . . . . . Bva05g00473 . . Cca03g00576 . . . . . . . . . Gma06g01736 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu1g2112 . . . . . . . . . . . . . . . . . . . Vra3g1078 .
Vvi17g0600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto3g1546 . . . . . . . . . . . . . . . . . . .
Vvi17g0601 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva05g00474 . . . . . . . . . . . . Gma06g01737 . . . Gso6g1628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g0602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g0593 Chr17 6634757 6638438 -
Acco Acco04g2730 Chr04 44091527 44094188 -
Accr Accr8g00032 Chr8 540758 543416 +
Adu Adu01g03290 Chr01 105592130 105594986 -
Aed Aed6g1569 Chr6 19761773 19764642 -
Aev Aev01g2116 Chr01 25604078 25606465 -
Ahy Ahy11g1895 Chr11 124069012 124071921 -
Aip Aip01g02096 Chr01 113528400 113531045 -
Alju Alju06g2692 Chr06 53942142 53944795 -
Amo Amo11g2227 Chr11 122136748 122139666 -
Apr Apr9g3008 Chr9 36926377 36929553 +
Arst Arst1g04245 Chr1 104848334 104851251 -
Bisa Bisa08g1835 Chr08 43980777 43983776 +
Bva Bva06g01228 Chr06 9494482 9496911 +
Car Car07g00951 Chr07 8377893 8380470 +
Cca Cca11g01950 Chr11 44899206 44901599 -
Dere Dere03g0913 Chr03 14047283 14049541 -
Dod Dod05g1732 Chr05 42726306 42729288 -
Glsi Glsi02g0833 Chr02 5370839 5374900 -
Gma Gma17g00936 Chr17 8000416 8002894 -
Lal Lal14g1912 Chr14 18436565 18440084 +
Lasa Lasa4g03266 Chr4 580021167 580023936 -
Lele Lele21g1890 Chr21 26226837 26229592 -
Lele Lele22g1860 Chr22 23525446 23528244 -
Lele Lele23g0124 Chr23 802307 805066 +
Lele Lele24g1808 Chr24 23142024 23144700 -
Mal Mal5g4243 Chr5 113412280 113415493 -
Mepo Mepo1g01269 Chr1 12438369 12441586 +
Mesa Mesa29g01299 Chr29 16752632 16755683 +
Mibi Mibi09g0140 Chr09 1863416 1866075 +
Mtr Mtr4g3923 Chr4 52976818 52981020 -
Phac Phac3g02923 Chr3 30888186 30890849 +
Phco Phco8g01332 Chr8 13894533 13899526 -
Prci Prci4g3028 Chr4 41808362 41811802 -
Psa Psa4g1201 Chr4 85386506 85389655 +
Pste Pste6g02547 Chr6 12841491 12846104 -
Pumo Pumo4g01294 Chr4 16508594 16511041 +
Pvu Pvu3g1971 Chr3 40283400 40285767 +
Rops Rops2g03896 Chr2 71384567 71389771 +
Spst Spst3g04690 Chr3 98721968 98724089 -
Ssu Ssu6g1269 Chr6 20611652 20614542 +
Sto Sto3g1544 Chr3 11429737 11432809 -
Tpr Tpr5g3031 Chr5 53245882 53248604 -
Trre Trre15g04202 Chr15 52636193 52638672 -
Tsu Tsu04g03689 Chr04 45952804 45955425 -
Vian Vian1g00767 Chr1 8038301 8040385 -
Vifa Vifa4g03348 Chr4 1048553557 1048557148 -
Vimu Vimu7g00790 Chr7 7852086 7854165 -
Viun Viun3g04574 Chr3 53356880 53359326 -
Vivi Vivi1g01941 Chr1 41381747 41385335 +
Vra Vra7g1886 Chr7 38386752 38389312 -
Vvi Vvi17g0594 Chr17 6639930 6640340 -
Vvi Vvi17g0595 Chr17 6658987 6659280 -
Vvi Vvi17g0596 Chr17 6661141 6663435 +
Vvi Vvi17g0597 Chr17 6668795 6671065 -
Bva Bva05g00472 Chr05 2330282 2332948 -
Sto Sto3g1545 Chr3 11436950 11439625 -
Vvi Vvi17g0598 Chr17 6677933 6687473 +
Apr Apr1g0914 Chr1 12642168 12643985 +
Vvi Vvi17g0599 Chr17 6681957 6682289 +
Aed Aed10g1043 Chr10 9212048 9213284 +
Bva Bva05g00473 Chr05 2333576 2334569 +
Cca Cca03g00576 Chr03 9857235 9859011 +
Gma Gma06g01736 Chr06 17577712 17580202 +
Ssu Ssu1g2112 Chr1 60401101 60402951 -
Vra Vra3g1078 Chr3 11129891 11131716 +
Vvi Vvi17g0600 Chr17 6690633 6690995 +
Sto Sto3g1546 Chr3 11444304 11446016 +
Vvi Vvi17g0601 Chr17 6692866 6693719 +
Bva Bva05g00474 Chr05 2334795 2336868 +
Gma Gma06g01737 Chr06 17580354 17582390 +
Gso Gso6g1628 Chr6 17174538 17176371 +
Vvi Vvi17g0602 Chr17 6697687 6699288 +
Car Car05g00741 Chr05 42062927 42064358 -