Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1545 ATGATCAATCAATGCTTAAAATCTAAAACTTCACACCTTGCTCGCAGATTCACATCCTCGCTCGCTTTGGCTGAAAATTCGTTCGCTACTTCTGTTTCTGCCGAATATGATGATGAAAACTACACTCCTTTCGACCCTTTTAAGTTCTTCAATGATCGCCATACGTCAACACTGCCCAACCTTAGAAACGCAAAAATGTTGCACGCCCATTTGCTTAGAACTGATGTATTGCAATCCAATATCTTTTTCACGAACTCTTTGCTCAGTTGGTACTGTAAATCTTCTGCCATGGTTGTTGCCCGCAAGCTGTTCGATAAAATTCCCCTTCCAAATGTTTACTCCTGGAATATCATGATATCTGGTTATAATGATAACTCATTGTTTGGGAAATCATGGGAGATATTTTGTAGGATGCATTTGCTTGGTGTGGAGCTCAATGAGTTTACTTACGGGAGTGTTCTCTCGGCCTGTACTGCCTTGCAAGCTCCGGTATTTGGTGAGCAGGTTTATTCACTTGTAATGAAAAATGGGTTCATTTCCAATGGTTACGTTAGGACAGGAATGATagaatttttttccaaaaattgtAGCTTTCAGGAGGCTCAAAAGGTCTTCTTTGATGTTTCATGTGATAATGTGGTAAGTTGGAATGCTATTATTTCTGGGGCAGTTAGAAATGGAGAGTACCGGGCAGCTTTGAATCTTTTTCGCCAGATGTGTCATGGATCGCTAAAGCCAAATAGTTATACATTTTCAAGCATTTTAACAGCTTGTTGTACGCTTAGAGAATTGCAGATTGGAGAAGTAATTCATGGGTGGGTAATCAAATGTGTTGCAACAGATATTTTTGTGGAGACTGCTATTGTTGATTTATATGTTAAGTGTGGGCGCATGAATGAAGCTGCTATGAAATTCTTGCAGATGCCCATCCATAATGTGGTCTCCTGGACTGCGATAATTTCTGGGTTCGTGCAAGCAGATGATTCTATTAATGCTCTAAAGTTTTTCAAAGATATGAGAGACACAGGGGAGGACATAAATACCTATACAGTTACTAGTGTGCTTTCTGCATGTGCCAAGCCTGGGATGTTAAAAGAGGCGGGCCAAATTCATTCCTTGATATTGAAATTACCTCCAAGTTTGGATGCAAAAGTCCAGGCTGCTTTAATCAACATGTATACAAAAATAGGAGAAGTTGAACTATCTGAGTTAGCCTTCGGCAAGATGGATAATATGAAAGATCCATGCATACTGGCAGCAATGGTGTCTTCTTGTGCTCACAACCAAAATTCTGCAAAGGCAGTTGAGTTATTTCAGATTATGTTACAAGAAGGTGTGAGACCCGATAACTATTGTATTTCTAGTGTGTTAAGTATTATAAGCTGCTTAAATCTAGTGAGACAGATGCATAGTTACACTCTGAAGTCTGGACTAGTCACTGATGTCACTGTAGGCAGTTCTCTTTTCACAATTTACTCAAAGTGTGGTTGTTTAGAAGAATCTCATAGAGTTTTTGAGGAAGTTCCTGAGAAAGACAATGTCTCATGGGCATCAATGATTTCTGGTTTTGTAGAACATGGCTGCCCAGACAAGGCTTTACAGCTATTCAAAGAAATGCTATCCCATGAGATTTTACCTGATTACTTGACCTTGACTGCAACACTAACTGCATGTGCTGCTGGTTTTCTACAAATAGGTAAAGAAATTCACGGTTATGCTTTTCGTTTAGGAATGGGAACAAACAAAGTTGTTGGTGGTGCACTTGTGTCCATGTACTCAAAATGTCGTAGCTTGGAGTTGGCAAGGAAGGTGTTCGAAATGCTGCCCCAAAAGGATGTTGTTGCTTGTTCTTCCTTAGTCTCAGGATATGCGCAAAATGGCTTTGTTGAAGAGGCACTTTTGTTATTCCATGATATGATCAGGACTGATCTAGCAGTTGATACCTTCACAATTTCATCTGTTCTCAGGGCTATTGCACTCTTAAATAGATCACCAATTGGGACTCAACTGCATGCCTACATTGAAAAATTGGGCTTACAATCAAATGTATCTGTTGGTAGTTCACTAGTGACAATGTACTCGCAATGTGGAAGTTTAGAGGATTGCCGTAAAGCATTTGACCATATTGAGAAGCCTGATTTGATAGGTTGGACTGCTATCATAGTGAGCTATGCTCAACATGGTAAAGGTTTAGAAGCCTTAGCTGCTTATGAACTTATGAGAAGAGAAGGCATTCAACCTGATGAAGTAACTTTGGTTGGTGTGCTTTTGGCTTGTAGTCACAGTGGGTTGGTTGAAGAAGCCTTCTCCTATTTTAATGCAATGGTCAAAGACTTCAACATTAAGCCTGGTCATCGTCATTATGCCTGTATCGTTGATCTTCTTGGTCGATCCGGTAGATTAAGAGAGGCTGAAAGTTTCATCAACAGTATGCCAATTGAGCCTGATGCTTTAATATGGGGAACACTGCTTGCTGCTTGCAAGGTCCATGGTGATTTTGAGCTTGGGAAGTTAGCGGCCAAAAAGGTAATGGAATTGAGTCCATCGGATGCTGCAGCTTATGTCTCCTTCTCAAACATGTGTGCAGACTTAGGACAGTGGGAAGAAGTTGTGAGGATTCGAGGACTGATGAAAGGATCTGGGACAAATAAAGAACCTGGTTGGAGCTTTGTGTGA 2676 0.4032 MINQCLKSKTSHLARRFTSSLALAENSFATSVSAEYDDENYTPFDPFKFFNDRHTSTLPNLRNAKMLHAHLLRTDVLQSNIFFTNSLLSWYCKSSAMVVARKLFDKIPLPNVYSWNIMISGYNDNSLFGKSWEIFCRMHLLGVELNEFTYGSVLSACTALQAPVFGEQVYSLVMKNGFISNGYVRTGMIEFFSKNCSFQEAQKVFFDVSCDNVVSWNAIISGAVRNGEYRAALNLFRQMCHGSLKPNSYTFSSILTACCTLRELQIGEVIHGWVIKCVATDIFVETAIVDLYVKCGRMNEAAMKFLQMPIHNVVSWTAIISGFVQADDSINALKFFKDMRDTGEDINTYTVTSVLSACAKPGMLKEAGQIHSLILKLPPSLDAKVQAALINMYTKIGEVELSELAFGKMDNMKDPCILAAMVSSCAHNQNSAKAVELFQIMLQEGVRPDNYCISSVLSIISCLNLVRQMHSYTLKSGLVTDVTVGSSLFTIYSKCGCLEESHRVFEEVPEKDNVSWASMISGFVEHGCPDKALQLFKEMLSHEILPDYLTLTATLTACAAGFLQIGKEIHGYAFRLGMGTNKVVGGALVSMYSKCRSLELARKVFEMLPQKDVVACSSLVSGYAQNGFVEEALLLFHDMIRTDLAVDTFTISSVLRAIALLNRSPIGTQLHAYIEKLGLQSNVSVGSSLVTMYSQCGSLEDCRKAFDHIEKPDLIGWTAIIVSYAQHGKGLEALAAYELMRREGIQPDEVTLVGVLLACSHSGLVEEAFSYFNAMVKDFNIKPGHRHYACIVDLLGRSGRLREAESFINSMPIEPDALIWGTLLAACKVHGDFELGKLAAKKVMELSPSDAAAYVSFSNMCADLGQWEEVVRIRGLMKGSGTNKEPGWSFV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Sto3g1545 891 Pfam PPR repeat 420 446 IPR002885 -
Sto3g1545 891 Pfam PPR repeat 756 777 IPR002885 -
Sto3g1545 891 Pfam PPR repeat 788 811 IPR002885 -
Sto3g1545 891 Pfam PPR repeat 717 745 IPR002885 -
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Sto3g1545 891 PANTHER OS09G0413300 PROTEIN 678 891 - -
Sto3g1545 891 PANTHER OS09G0413300 PROTEIN 367 462 - -
Sto3g1545 891 PANTHER OS09G0413300 PROTEIN 563 679 - -
Sto3g1545 891 PANTHER OS09G0413300 PROTEIN 61 366 - -
Sto3g1545 891 PANTHER OS09G0413300 PROTEIN 465 580 - -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 614 647 IPR002885 -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 113 147 IPR002885 -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 314 345 IPR002885 -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 419 449 IPR002885 -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 717 749 IPR002885 -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Sto3g1545 891 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 731 888 IPR011990 GO:0005515
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 53 164 IPR011990 GO:0005515
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 463 564 IPR011990 GO:0005515
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 574 664 IPR011990 GO:0005515
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 166 269 IPR011990 GO:0005515
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 376 462 IPR011990 GO:0005515
Sto3g1545 891 Gene3D Tetratricopeptide repeat domain 270 375 IPR011990 GO:0005515
Sto3g1545 891 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Sto3g1545 891 Pfam PPR repeat family 312 360 IPR002885 -
Sto3g1545 891 Pfam PPR repeat family 611 657 IPR002885 -
Sto3g1545 891 Pfam PPR repeat family 212 260 IPR002885 -
Sto3g1545 891 Pfam PPR repeat family 110 157 IPR002885 -
Sto3g1545 891 Pfam PPR repeat family 511 559 IPR002885 -
Sto3g1545 891 Pfam E motif 830 891 IPR046848 -
Sto3g1545 891 PANTHER OS07G0578800 PROTEIN-RELATED 465 580 IPR045215 GO:0003723|GO:0009451
Sto3g1545 891 PANTHER OS07G0578800 PROTEIN-RELATED 61 366 IPR045215 GO:0003723|GO:0009451
Sto3g1545 891 PANTHER OS07G0578800 PROTEIN-RELATED 563 679 IPR045215 GO:0003723|GO:0009451
Sto3g1545 891 PANTHER OS07G0578800 PROTEIN-RELATED 367 462 IPR045215 GO:0003723|GO:0009451
Sto3g1545 891 PANTHER OS07G0578800 PROTEIN-RELATED 678 891 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1545 Sto-Chr3 11436950 11439625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1545 227 891 Glycoside Hydrolase AT3G49170 33.575 2.86e-129 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1545 - - jre:108995418 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1545 3 11436950 11439625 Sto3g1545 3 11436950 11439625 ECH