Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00472 ATGAATTCTCTCATCAATCAAAGCTTCCAAACCAAAACTACACACTTCGCCCGCAGATTCACATATTCGGTCACCTTTGCAGAAATTACTTGTCTCAAACATGAAGAAAGCTCCACTCTTTTCGACCCTCCTAAGTTCTTCAGTACACACAGAATGTCAAAACACAAGAGTGTTAGAAACACAAAAGTTTTACACGCCCATTTGCTTACGACTGGTGCATTACGATCCAATATCTTTTTCACAAACTCTTTGCTCGATTGGTACTGTAAATCCGGTGCCGTGGTTGTTGCCCGCAAATTGTTCGATGCAGTTCCTCTTCGGCAGGTTATCTCTTGGAATATCATGATGTCTGGGTACAACCATAATTCAATGTTTCAGAAATCATGGGAGATATTTTGTGGCATGCATTTGCTTGGTTTTGAGCCCAATGAGTCTACTTACAGGAGTGTTCTTTCAGCCTGTGCCGCCTTGCAAGCTCCAATTTGGCGAGCAAGTCTATTCCCTTACAATAAAAAGGGGTTCATTTCAAATGGTTATGTTAGGTCTGGTATGATGGATATGTTTGCCAAAAGTTGCAGCTTTAACAATGCTTTAAGGATCTTCTTTGATGTTTCATGTGATAACAAGGTATGTTGGAATGTAATTATTTCTGGGGCAGTTAGAAATGGAGAGAACTGGGTTGCTTTGGATCTTTTTCGTCAAATGTGCAGTGCATCTCTATTTCCTAATAGCCATACGTTTTCAAGCATTTTAACAGCTTGTACTGTGCTTAGAGAACTGGAGATCGGGAAAGCAATTCATGTATGGTTGATCAAATGTGGTGTAGCAGATGTCTTTGTTGATACTGctataattgatttatatgcGAAATGTGGGTGTATGCATGATGCCGCTGAGAAATTCTCACAGATGACAGTCCATAATGTTGGGTCTTGGACAGCTATAATTTCTGGGTTTGTGAGAGAGGATGATTCTGTTTCTGCTCTAGAGTTTTTCAAAGATATGAGAGAAGTGGGGGAGGAGATCAGTAACTTTACTGTTACTAGTGTACTTGCTGCATGTGCAAAACCAGGGATGATTGAAGAGGCTAGCCAAATCCATTCcttgatattaaaattaggATTTTGCTTGGATGTAACTGTTGGGGCTGCTTTGATCAACATGTATGCAAAATTAGGAGAAGTTGGACTATCTGATTTAGCTTTcagtgagataaaaaattcGAAGGATCAGGGCAAATGGGCAGCAATGATGTCTTCCTTTGCTCAGAATaaaaattctggaaacatAGTTGAATTATTCCAGACTATGCTAGCACAAAGTATGAGGCCTGATAGTCATTGTATTTCTAGTGTGTTAAGTGTTATAAGTTGTTTAAATCTAGGGAGACAAATGCATTGTTACTGTCTGAAGTCTGGGCAAGTTACTGATCTTTCTTTAGGCAGTTCAATTTTCACAATGTACTCGAAATGTGGTTGTCTAGGGGAATCTTATGAAGTTTTTGAGAAACTTCCTCAAAAAGACAATGTCTCCTGGACCTCAATGATAGCTGGTTTTGCTGACCATGGCCATGTAGATCGCGCTTTTCAGCTATTGAAAGATATGCTGTATCAAGAAATTGCACCTGATCAAATCACTCTAATTGCAATTCTAACTGCATGTTCTGCTCGATGTATCTTACCAACAGGTAAAGAAATTCATGGTTATGTTTTTCGTTTGGGATCAGGGACAAACACAGTTGTTGTTGGTGCACTTGTGACCATGTATTCAAAGTGTGGAAGATTGGAGTTGGCAAGAAAGGTGTTCAATATGCTACCCCAAAAGGATCCTGTTGCTtgctcttcattggtctcaggATATGCTCAAAACGGCTTAATTGAGGAGGCAATCTTGGCATTTAATGATATGCTCCTATTAGGTGTGGAAGTTGACTCCTTCATTATTTCATCTATTCTCCGTGCTGTTGCACTTTTAAACAAATCGTCAATTGGGATTCAACTGCATGCATTCATTGTAAAGCTAGGCTTGGCATCTGATGCATCTATTGGCAGTTCACTAGTTACAATGTACTCAAATTATGGAAGCATTGAGGATTGCCGTAAAGTATTTGATCAAGTTGAGAAGCCTGATTTGATAAGTTGGACAGCTATCATAGTGAGCTATGCTCAACATGGTAAAGGTGCAGAGGCCTTAGCTACTTATGAACTTATGAGAAAAGAAGGCATCCAACCTGATTCTGTAACTTTTGTTGGGGTTCTATTGGCTTGCAGTCATAGCGGGTTGGTGGAAGTAGccttcttctattttaatttaatggtgAAAGACTATGGCATTAAGCCTGGTCATCGTCATTATGCTTGTATCGTTGATATTCTTGGTCGATCAGGTAGATTGAGAGAGGCTGAAAGTTTTATTAATAACATGCCTCTTGAGCCTGATGCTTTAATATGGGGAACACTGCTTGCTGCTTGCCAGGTCCATGGTGATTTTGAGCTCGGAAAGATGGCAGCCAAAAAGGTAATGGAATTGGGATCATGTGATGCCGGAGCTTATGTTTCCTTGTCAAACATCTGTGCAGATGTAGGACAGTGGGAAGAAGTTGCAAACATTAGAAGCCTGATGAAGGGAACTGGGACAAAGAAAGAGCCTGGATGGAGCTATGTGTG 2666 0.3886 MNSLINQSFQTKTTHFARRFTYSVTFAEITCLKHEESSTLFDPPKFFSTHRMSKHKSVRNTKVLHAHLLTTGALRSNIFFTNSLLDWYCKSGAVVVARKLFDAVPLRQVISWNIMMSGYNHNSMFQKSWEIFCGMHLLGFEPNESTYRSVLSACAALQAPIWRASLFPYNKKGFISNGYVRSGMMDMFAKSCSFNNALRIFFDVSCDNKVCWNVIISGAVRNGENWVALDLFRQMCSASLFPNSHTFSSILTACTVLRELEIGKAIHVWLIKCGVADVFVDTAIIDLYAKCGCMHDAAEKFSQMTVHNVGSWTAIISGFVREDDSVSALEFFKDMREVGEEISNFTVTSVLAACAKPGMIEEASQIHSLILKLGFCLDVTVGAALINMYAKLGEVGLSDLAFSEIKNSKDQGKWAAMMSSFAQNKNSGNIVELFQTMLAQSMRPDSHCISSVLSVISCLNLGRQMHCYCLKSGQVTDLSLGSSIFTMYSKCGCLGESYEVFEKLPQKDNVSWTSMIAGFADHGHVDRAFQLLKDMLYQEIAPDQITLIAILTACSARCILPTGKEIHGYVFRLGSGTNTVVVGALVTMYSKCGRLELARKVFNMLPQKDPVACSSLVSGYAQNGLIEEAILAFNDMLLLGVEVDSFIISSILRAVALLNKSSIGIQLHAFIVKLGLASDASIGSSLVTMYSNYGSIEDCRKVFDQVEKPDLISWTAIIVSYAQHGKGAEALATYELMRKEGIQPDSVTFVGVLLACSHSGLVEVAFFYFNLMVKDYGIKPGHRHYACIVDILGRSGRLREAESFINNMPLEPDALIWGTLLAACQVHGDFELGKMAAKKVMELGSCDAGAYVSLSNICADVGQWEEVANIRSLMKGTGTKKEPGWSYV 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00472 888 Gene3D Tetratricopeptide repeat domain 708 886 IPR011990 GO:0005515
Bva05g00472 888 Gene3D Tetratricopeptide repeat domain 410 560 IPR011990 GO:0005515
Bva05g00472 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Bva05g00472 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 259 557 - -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 54 362 - -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 171 453 - -
Bva05g00472 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Bva05g00472 888 Pfam PPR repeat family 709 756 IPR002885 -
Bva05g00472 888 Pfam PPR repeat family 308 356 IPR002885 -
Bva05g00472 888 Pfam PPR repeat family 108 155 IPR002885 -
Bva05g00472 888 Pfam PPR repeat family 507 554 IPR002885 -
Bva05g00472 888 Pfam PPR repeat family 208 254 IPR002885 -
Bva05g00472 888 TIGRFAM PPR: pentatricopeptide repeat domain 311 341 IPR002885 -
Bva05g00472 888 TIGRFAM PPR: pentatricopeptide repeat domain 510 543 IPR002885 -
Bva05g00472 888 TIGRFAM PPR: pentatricopeptide repeat domain 110 144 IPR002885 -
Bva05g00472 888 TIGRFAM PPR: pentatricopeptide repeat domain 611 644 IPR002885 -
Bva05g00472 888 TIGRFAM PPR: pentatricopeptide repeat domain 712 746 IPR002885 -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 398 888 - -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 398 888 - -
Bva05g00472 888 Pfam E motif 827 888 IPR046848 -
Bva05g00472 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Bva05g00472 888 Gene3D Tetratricopeptide repeat domain 570 663 IPR011990 GO:0005515
Bva05g00472 888 Gene3D Tetratricopeptide repeat domain 47 159 IPR011990 GO:0005515
Bva05g00472 888 Gene3D Tetratricopeptide repeat domain 267 368 IPR011990 GO:0005515
Bva05g00472 888 Gene3D Tetratricopeptide repeat domain 169 266 IPR011990 GO:0005515
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 54 362 - -
Bva05g00472 888 Pfam PPR repeat 82 102 IPR002885 -
Bva05g00472 888 Pfam PPR repeat 611 641 IPR002885 -
Bva05g00472 888 Pfam PPR repeat 582 607 IPR002885 -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 259 557 - -
Bva05g00472 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 171 453 - -
Bva05g00472 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 643 IPR002885 -
Bva05g00472 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00472 Bva-Chr5 2330282 2332948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00472 228 888 Glycoside Hydrolase AT3G49170 32.988 3.29e-115 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00472 - - vra:106758739 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00472 05 2330282 2332948 Bva05g00472 05 2330282 2332948 ECH