Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01950 ATGGAATCGGCGGGGGAGTGGCTGGAGAAGGCGCTGGTGGAGTTATGCTCGAAGATAGAAACAGGTTTGGGTTTAGGTTTGGACGAAGAGATCATTAAAGGCCTCGTTTCTTATTGCGACCTTGCTCAGCCACGAGATGCTAAAGAGTACCTTGACAATATAATTGGTCAGGAAGCAGGGAAAACTGTGATTGAAGAATATTTACGACGGAGAGGGCACTCAGAATTCGGTACCAGCTCAGATGTTCCAACCACCAAATTACATGCATATGTCAAACCGCCTTCAGTTGAGACATCTGCTAGTGGCACTAAGAAATCATTTAGAACACCAAAAGCAGGGGCGCCGGGCCGAAGTAATCAGGCAGAACCCAACAAGAATGCAGTTAGAAGTAATCAGGAGAATCAGGCTCCAGCTGCAGGCAGTGAATCAAGAACATCACAAAAGGGAAACCAAGTGAGTTCCAAAAAGAAGAAAGCTGGGAAAGCCGTCTCACTTGCTGAGGCTGCCAAAGGGTCAATTGTGTTCCAGCAGGGAAGACCATGCGCTTGTCAAGCACGTCGGCACAGGCTGGTCAGCAATTGCTTGTCTTGTGGAAAAATAGTTTGTGAACAAGAAGGAGAGGGGCCTTGCAATTTTTGTGGCGCACTTGTGTTAAGAGAGGGTAGCTCATATGCTGGTCTGGAAGAAAGTTTGCCTCCCTTGTCAGATGCTGAGGCTGCTGCTGAAGCTTATGCAAAGAGGCTTGTTGATTATGACCGAAATGCTGCAGCTCGTACAACAGTTATTGATGACCAAAGTGACTACTATGAGATTGATGGAAACAGTTGGTTGTCAAAGGAGGAAAAAGAAATGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAGCGAGCCAAACGGAATAGAGTTGTTGTGACTTTTGATCTAGTTGGCCGCAAGGTTCTTGTGAATGAAGATGAGGTTTCAGAATTGCAGTCGGAAAATAGAATATTACGTCCACAAGATGAAAGGGAAATGAACCGTATCAAACCAAACCCAACTCTTAAGATTCAACCGGTTTTTGTGGACTTGGGCTTCAGTAGGAAGTCTGCTAAAGATAGGCAATCACACAAAGGCATAAGCAAGGGCTTGTGCTTGGAGATTACTGGGAGGGTGCAGCATGATAGCAATGACCCGAAGCATTTTATGAGGGAAAGCCAATTGGCAACAGCTTCAAATGAAAATGTTTGGCAAGTATCTTCGGGAAATGGAGGAGTGTACGTTGAAGATGATGGTGAATGTTTACTGAACTATAATAAGTAA 1302 0.4501 MESAGEWLEKALVELCSKIETGLGLGLDEEIIKGLVSYCDLAQPRDAKEYLDNIIGQEAGKTVIEEYLRRRGHSEFGTSSDVPTTKLHAYVKPPSVETSASGTKKSFRTPKAGAPGRSNQAEPNKNAVRSNQENQAPAAGSESRTSQKGNQVSSKKKKAGKAVSLAEAAKGSIVFQQGRPCACQARRHRLVSNCLSCGKIVCEQEGEGPCNFCGALVLREGSSYAGLEESLPPLSDAEAAAEAYAKRLVDYDRNAAARTTVIDDQSDYYEIDGNSWLSKEEKEMLKKKQEEMEEAERAKRNRVVVTFDLVGRKVLVNEDEVSELQSENRILRPQDEREMNRIKPNPTLKIQPVFVDLGFSRKSAKDRQSHKGISKGLCLEITGRVQHDSNDPKHFMRESQLATASNENVWQVSSGNGGVYVEDDGECLLNYNK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01950 433 MobiDBLite consensus disorder prediction 74 159 - -
Cca11g01950 433 Coils Coil 234 254 - -
Cca11g01950 433 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 3 432 IPR039128 -
Cca11g01950 433 MobiDBLite consensus disorder prediction 119 153 - -
Cca11g01950 433 Coils Coil 278 302 - -
Cca11g01950 433 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 3 432 - -
Cca11g01950 433 Pfam Putative zinc finger motif, C2HC5-type 179 219 IPR009349 GO:0005634|GO:0006355|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01950 K23398 - gmx:100810833 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01950 11 44899206 44901599 Cca11g01950 11 44899206 44901599 ECH