Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1269 ATGGCATCGGCGGGGGAGTGGCTGGAGAAGGCGCTGGTGGAGTTGTGTTCGAAGATAGAAACAGGGTTGGGTTTAGGTTTGGACGAAGAGATCATAAAAGGCCTCGTTTCTTACTGCGACCTTGCCGAGCCACGAGACGCTAAAGAGTACCTTGACAATATAATTGGCCAGGAAGCAGGGAAAACTGTGATCGAAGAATATTTACGGCGGAGAGGTCACTCAGAATTCAGCACCAATTCAGATGTTCCAACTACCATATTACATGCATATGTCAAACCGCCTTCAGTTGAGACATCTGCTAGTGGAACTAAGAAATCATTTAGAGCACCAAAAGCAGCAGGCCGCAGTTATCATGCAGAACCCACCAAGAATGCAATTAGCAGTAATCAGGAAAATCAGACTCCAACTGTAGGTAGTGAATCAAGAACATCGCAAAGGGGAAACCAGGTGAATTCCAAAAAGAAGAAAGCTGGGAAAGCTGTATCACTTGCTGAGGCTGCCAAAGGGTCAATCGTGTTCCAGCAGGGAAGGCCATGCTCTTGTCAAGCACGTCGTCACAGGCTGGTCAGCAATTGCTTATCTTGTGGCAAAATAGTTTGTGAACAAGAAGGAGAGGGGCCTTGCAATTTCTGTGGTGCACTTGTGTTAAGAGAGGGCAGCTCGTATGCTGGTCTGGAAGAAAGTTTGCCACCCTTGTCAGACACTGAGGCTGCTGCTGAAGCTTATGCAAAGAGGCTTGTTGAATATGACCGAAACTCTGCAGCTCGTACAACAGTTATTGATGACCAAAGTGACTACTATGAGATTGATGGAAACAGTTGGTTGTCAAAGGAGGAGAAAGAACTGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAGCGAGCCAAACGGAATAAAGTTGTTGTGACTTTTGATCTAGTTGGCCGCAAGGTCCTTCTGAATGAAGATGAAGTTTCAGAGTTACAGTCTGACAATAGAATATTACGTCCACCAGATGAAAGGGAAGTGAACCGTATCAAACCAAACCCAACTCTTAGGTTTCAACCTGTTTTCGTGGACCTGGGCTTTAGTAGGAAGTCTGCTAAAGATAGGCAATCACATAAAGGCACAAGCAAGGGCTTGTGCTTGGAGATTACTGGGAGAGTGCAGCATGATAGCAATGACCAGAAGTATTTTATGATGGAAAGCCAAGTGGCAACAGCTTCAAATGATAATGTTTGGCAAGTATCTTCAGGAAATGGAGGAGTGCATGTTGAAGATGATGGAGAATGTTTACTGAACTATGATAATAAGTTTCCCCTTGCCAACTAG 1314 0.4498 MASAGEWLEKALVELCSKIETGLGLGLDEEIIKGLVSYCDLAEPRDAKEYLDNIIGQEAGKTVIEEYLRRRGHSEFSTNSDVPTTILHAYVKPPSVETSASGTKKSFRAPKAAGRSYHAEPTKNAISSNQENQTPTVGSESRTSQRGNQVNSKKKKAGKAVSLAEAAKGSIVFQQGRPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCNFCGALVLREGSSYAGLEESLPPLSDTEAAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIDGNSWLSKEEKELLKKKQEEMEEAERAKRNKVVVTFDLVGRKVLLNEDEVSELQSDNRILRPPDEREVNRIKPNPTLRFQPVFVDLGFSRKSAKDRQSHKGTSKGLCLEITGRVQHDSNDQKYFMMESQVATASNDNVWQVSSGNGGVHVEDDGECLLNYDNKFPLAN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1269 437 MobiDBLite consensus disorder prediction 121 151 - -
Ssu6g1269 437 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 3 430 - -
Ssu6g1269 437 Coils Coil 276 303 - -
Ssu6g1269 437 MobiDBLite consensus disorder prediction 94 157 - -
Ssu6g1269 437 Pfam Putative zinc finger motif, C2HC5-type 177 217 IPR009349 GO:0005634|GO:0006355|GO:0008270
Ssu6g1269 437 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 3 430 IPR039128 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1269 K23398 - gmx:100810833 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1269 6 20611652 20614542 Ssu6g1269 6 20611652 20614542 ECH