Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g2227 ATGGGATCGGCGGGGGAGTGGCTGGAGAAGGCGCTGGTGGAATTGTGTTCGAAGATAGAGACGGGATTGGGTTTGGGTTTGGATGAAGAGATTATAAAGGGACTTGTTTCTTACTGTGACCTTGCTGAGCCTCGCGATGCTAAGGAGTACCTTGATAATATAATTGGTCAGGAAGCCGGGAAGCCTGTGATTGAAGAATATTTAAGACGGAGGGGTCACTTAGAACTCACAACCAAATCCAATGTTCCAACTGCCCAATTGCATGCCTATGTCAAACCTTCAGTTGAGGCATCTGCAGGTGGAAGTAAGAAATCATCGAGAGCACCAAAAGCAGTTACAGTCCAAAGAAGTAATGCCGAACCCATCAAGAATGCAGTTCCCAGCAATCAGAAAAATCAGGTTCCAACTTCAGGCGGTGAATCGAGTACATCACAGAAAGGAAACCAAGGGAATTCCAAAAAGAAGAAGGCTGGGAAAGCCATTTCGCTTGCCGAGGCAGCCAAAGGGTCAATTGTGTTTCAGCAGGGAAGACCATGCTCTTGTCAAGCTCGTCGTCACAGGCTGGTCAGCAATTGCTTATCATGTGGCAAAATAGTTTGTGAACAAGAAGGAGAGGGGCCTTGCCATTTCTGCGGCGCACTTGTGTTGAAAGAGGGCAGCTCGTACGCTGGTCTGGAAGAAACATTGCCCCCTTTATCGAATACCGAAGCTGCTGCTGAAGCTTATGCAAAGAGGCTTGTCGAATATGATCGAAATGCTACTGCTCGTACAACTGTTATCGATGACCAAAGTGACTATTATGAGATTGATGGAAACAGTTGGTTGTCAAAGGAGGTACTGTATTTTACTACTTGTATGCAACTTGCAATGATGTATGCATCTGGTAGTCTGATCAAATTTTTTCTTCTTTTTCTTCAGGAGAAAGAGATGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAACGAGCCAAACGGAATAAAGTGGTTGTGACTTTTGATCTGGTTGGACGCAAGGTTCTTCTGAATGAAGATGAAGTTTCAGAACTAGAGTCTGACAATAGAATACTACGTCCACCAAATGAAAAGGAAGTGAACCGTATCAGACCAAATCCAAGTCTTAGAGTACAGCCCATTTTTGTAGACCTAGGATTCACTAAGAAGCATACAAAAGATAGGCAAACAAACAAAGGCGTAAGCAACAGTTTGTGCCTGGAGATTACTGGGAGGGTGCAACATGAAAGCAATGACATGAAGTATTTTATGATGGACAACCAATTGGCAGCAGCAGCTTCAAGTGAAAAATTTTGGAAAGCATCTTCTGCAAATGGAGTATACGATGGTGATGATGGTGAATGTTTTAGGAGTAACCAATGA 1377 0.4379 MGSAGEWLEKALVELCSKIETGLGLGLDEEIIKGLVSYCDLAEPRDAKEYLDNIIGQEAGKPVIEEYLRRRGHLELTTKSNVPTAQLHAYVKPSVEASAGGSKKSSRAPKAVTVQRSNAEPIKNAVPSNQKNQVPTSGGESSTSQKGNQGNSKKKKAGKAISLAEAAKGSIVFQQGRPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCHFCGALVLKEGSSYAGLEETLPPLSNTEAAAEAYAKRLVEYDRNATARTTVIDDQSDYYEIDGNSWLSKEVLYFTTCMQLAMMYASGSLIKFFLLFLQEKEMLKKKQEEMEEAERAKRNKVVVTFDLVGRKVLLNEDEVSELESDNRILRPPNEKEVNRIRPNPSLRVQPIFVDLGFTKKHTKDRQTNKGVSNSLCLEITGRVQHESNDMKYFMMDNQLAAAASSEKFWKASSANGVYDGDDGECFRSNQ* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g2227 458 MobiDBLite consensus disorder prediction 108 151 - -
Amo11g2227 458 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 3 278 - -
Amo11g2227 458 PANTHER TRANSCRIPTION REGULATOR/ ZINC ION BINDING PROTEIN 305 455 - -
Amo11g2227 458 Coils Coil 304 331 - -
Amo11g2227 458 Coils Coil 232 252 - -
Amo11g2227 458 MobiDBLite consensus disorder prediction 96 160 - -
Amo11g2227 458 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 305 455 IPR039128 -
Amo11g2227 458 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 3 278 IPR039128 -
Amo11g2227 458 Pfam Putative zinc finger motif, C2HC5-type 177 217 IPR009349 GO:0005634|GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g2227 Amo-Chr11 122136748 122139666 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g2227 K23398 - gmx:100810833 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2227 11 122136748 122139666 Amo11g2227 11 122136748 122139666 ECH
Amo01g4245 01 118132683 118135174 Amo11g2227 11 122136748 122139666 hybridization