Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0596 ATGAGTCCTGCTTTGCTTCCTAAACATGTTGCTGCAGTGGTAAAATATCAGAAGAATCCTCTTAAAGCACTGGAAATATTCAATTCAGTTAAAAAGGAGGATGGGTTCAAGCACACATTGTTAACCTATAAGGGCATGATTGAAAAGCTTGGGTTTCATGGGGAGTTCGAGGCCATGGAAGAGGTGCTCGCGGAGACGAGGATGAATATCGACAATGGTTTATTAGAAGGAGTTTATATTGGGGCCATGAGAAATTATGGAAGAAAAGGAAAAATTCAAGAAGCTGTGGATGTATTTGAGAGGATGGATTTTTTCAATTGTGAGCCATCGGTTCAGTCATATAATGCGATAATGAATATACTGGTGGAGTATCGGTATTTTGATCAAGCCCACAAGGTGTATATGAGAATGAGAGACAAGGGTATAGTTCCTGATGTTTACACCTTCACAATTAGGATGAAGTCCTTTTGTAGGACCAGTAGGCCACATGCTGCTCGGAGGCTTCTGAATAACATGCCTTCCCAGGGGTGTGAATCAAGTGCAGTTGCATATTGTACAGTGATAGGTGGGTTTTATGAAGAGAATCATCGAGTTGAAGCACATGAATTGTTTGAGGAAATGCTTGGTCTAGGTATTTGTCCAGATATAATGGCATTTAATAAGCTTATACACACACTTTGTAGGAAGGGGCATGTTCAAGAAAGTGAAAGACTTCTCAACAAGGTTTTAAAGAGGGGAGTGTCTCCAAATTTATTTACAGTCAATATCTTCATTCAAGGCTTTTGTCAAAGGGCCATGCTTAATGAAGCTATCCGTTTGTTGGATGGTGTAGGGAGGGGTCTGACTCCTGATGTGATCACATACAACACACTCATATGTGGCCTGTGTAAGAACTTTAAGGTTGTGGAAGCTGAGCATTATTTGCGTAAGATGGTGAATGAAGGGTATGAGCCTGATGGTTTCACCTACAACAGTATTATTGATGGATATTGCAAGCTGGGTATGATGCAAAATGCAGATCAAATTCTGAGAGATGGAGCTTTCAAGGGGTTTGTGCCTGATGAATCCACATATTGCTCCCTAATCAATGGGTTATGCCAGGATGGTGACATAGATAGGGCAATAAATGTATTTAATGAAGCCATGGAAAAAGGATTAAAGCCTAATCTTGTTCTCTGCAACACATTAGTCAAAGGTTTGTCTCAGCAGGGACTTATTTTGCAAGCCTTGAAGCTGATGAATGAAATGTCAGAGAATGGTTGCAGTCCTGACATATGGACGTACAATTTAGTTATAAATGGTTTGTGCAAGATAGGTTGTGTATCTGATGCCGATAACCTAGTAATTGATGCTATAGCCAAAGGGCATCTTCCCGATGTTTTCACTTTTAATACCCTAATTGATGGTTATTGTAAAAAACTGAAGTTGGACAATGCGATTGAGATCGTTGATAGAATGTGGAACCATGGTGTTTCCCCAGATGTGATCACATATAACTCCATTCTCAATGGCCTCTGCAAGGCTGGAAAGTATGAAGATGTAATGGGAACTTTCAAATTAATGATGGAGAAGGGGTGTGTTCCTAACATTATCACATATAATATACTGACAGAAAGCTTTTGCAAAGCTCGAAAAGTAGAGGAAGCTCTGAACTTGATTGAGGAAATGCAAAACAAGGGTCTGACTCCAGATGTTGTCAATTTTGGGACATTGATGAAAGGTTTTTGCGATAATGGGGATTTGGATGGAGCCTACCAGCTATTTAAAAGAGTAGATGAGCAATATAAATTTTCTCATACAATAGCAACTTACAATATCATGATCAATGCATTTGCTGGGAAGCTGAATATGAACATGGCAGAAAAGCTTTTTAATAAGATGTGTGAAAATGGCTTCTCTCCAGACAGTTACACTTACCGTGTTATGATTGATGGTTTCTGTAAAACAGGAAACATTAATTCTGGGTACAGTTTTCTTCTGGTAAAGATTGAGAAGGGATTGATTCCATCACTGACAACATTTGGAAGGGTATTAAACTGTCTTTGCCTGAAGCGTAGAGTTCATGAAGCAGTTGGTATCATCCACCTTATGGTGCATAAAGGTATTGTACCAGAGGTTGTTAACACAATTTTTGAGGCTGATAAGAAGGAAGTAGCAGCACCTAAGATTGTTGTAGAAAACTTGATGAAGAAGGGTCATATAACTTACTTTGCATATGAAATTCTGCATGATGGCATTAGAGATAAGAAGCTATCAAGGAAGAAGCTTCCAACTTCCCAGAAGGTGTTCTCTTGA 2295 0.3926 MSPALLPKHVAAVVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVNTIFEADKKEVAAPKIVVENLMKKGHITYFAYEILHDGIRDKKLSRKKLPTSQKVFS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0596 764 Pfam PPR repeat family 388 437 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat family 601 648 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat family 109 158 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat family 458 507 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat family 528 577 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat family 283 332 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat family 214 263 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Vvi17g0596 764 SUPERFAMILY HCP-like 81 393 - -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Vvi17g0596 764 SUPERFAMILY HCP-like 467 658 - -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Vvi17g0596 764 PANTHER OS03G0856100 PROTEIN 596 707 - -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat 349 380 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat 182 212 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat 83 103 IPR002885 -
Vvi17g0596 764 Pfam PPR repeat 673 702 IPR002885 -
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 594 736 IPR011990 GO:0005515
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 279 382 IPR011990 GO:0005515
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 383 451 IPR011990 GO:0005515
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 2 136 IPR011990 GO:0005515
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 452 519 IPR011990 GO:0005515
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 137 208 IPR011990 GO:0005515
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 209 278 IPR011990 GO:0005515
Vvi17g0596 764 Gene3D Tetratricopeptide repeat domain 520 593 IPR011990 GO:0005515
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 357 389 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 182 216 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 218 250 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 531 565 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 673 704 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 82 111 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 427 460 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 113 146 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 321 354 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 603 636 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 147 179 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 461 495 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 496 530 IPR002885 -
Vvi17g0596 764 NCBIfam pentatricopeptide repeat 391 425 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 594 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vvi17g0596 764 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0596 Vvi-Chr17 6661141 6663435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0596 215 763 Glycosyltransferase AT1G05670 27.061 1.84e-70 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0596 - - vvi:100253631 1555.81