Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0597 ATGCGTTTTTCAGGATTTGATCCCAACCAGTTCACCTATGGGAGTGTTCTTTCGGCTTGTACTGCCTTAGGGTCTCCTTTGTATGGTGAACTGGTATATTCACTTGCACTGAAAAATGGGTTCTTCTCAAATGGGTATGTTCGGGCTGGAATGATTGATTTGTTTGCGAAGCTTTGTAGCTTTGAGGATGCTTTAAGGGTGTTTCAAGACGTTTTATGTGAGAACGTGGTTTGCTGGAATGCTATCATTTCTGGGGCTGTTAAAAATAGGGAAAATTGGGTTGCTTTAGATCTTTTCTGCCAAATGTGCTGCAGATTTTTTATGCCAAATAGTTTTACGTTTTCAAGCATTTTAACAGCTTGTGCTGCACTTGAGGAACTTGAGTTTGGAAGAGGGGTTCAAGGATGGGTGATTAAATGTGGTGCAGGAGAAGATGTTTTTGTGGGGACTGCCATCATTGATTTGTATGCCAAATGCAGGGATATGGATCAAGCTGTGAAGGAATTTTTGCGAATGCCAATCCGCAATGTAGTTTCCTGGACTACCATCATTTCTGGTTTTGTTCAGAAGGATGACAGTATTTCTGCTTTCCACTTCTTCAAAGAAATGAGAAAAGTAGGAGAGAAAATAAACAACTACACCATAACTAGTGTACTTACTGCTTGTACTGAGCCAGTTATGATCAAAGAGGCAGTCCAACTACATTCCTGGATTTTCAAAACTGGGTTCTATTTGGATTCCAATGTAAGTTCTGCTTTGATCAATATGTATTCAAAAATAGGAGTGGTTGACTTATCTGAGAGGGTGTTCAGAGAGATGGAAAGTACAAAGAACCTAGCCATGTGGGCTGTTATGATATCTGCCTTTGCTCAAAGTGGGAGTACTGGAAGGGCAGTTGAATTGTTTCAGAGGATGCTTCAGGAGGGTCTGAGACCTGATAAGTTTTGTAGTTCTAGTGTCTTGAGCATAATAGACAGTCTAAGTTTGGGGAGACTGATCCATTGCTACATTCTTAAAATTGGTTTGTTCACTGATATTTCTGTGGGCAGTTCTCTTTTCACAATGTACTCAAAATGTGGTAGTTTAGAGGAATCTTACACAGTTTTTGAGCAAATGCCTGACAAAGACAATGTTTCATGGGCCTCCATGATCACTGGGTTTTCAGAACATGACCATGCAGAACAAGCTGTTCAGTTGTTCAGAGAGATGCTGTTAGAAGAAATTAGACCAGATCAAATGACTTTAACTGCAGCTCTAACTGCATGTTCTGCTCTTCATTCCTTAGAAAAAGGAAAGGAAGTTCATGGGTATGCTCTTCGAGCACGAGTTGGCAAAGAGGTACTTGTGGGTGGTGCACTTGTAAATATGTACTCAAAATGTGGTGCCATAGTCTTGGCAAGGAGGGTATTTGACATGCTCCCCCAAAAGGATCAGTTTTCATGCTCCTCCTTGGTTTCAGGATATGCTCAAAATGGGTATATTGAAGATGCACTTCTGCTGTTCCATGAAATACGGATGGCTGATTTGTGGATTGACTCCTTCACAGTTTCATCTGTCATTGGGGCTGTAGCAATTTTAAACAGCTTAGACATTGGTACCCAACTGCATGCTTGTGTTACAAAAATGGGCTTAAATGCAGAAGTTTCTGTTGGCAGCTCTCTAGTTACAATGTATTCAAAATGTGGAAGCATTGACGAATGTCATAAGGTGTTTGAACAGATTGAAAAACCTGATTTGATCAGTTGGACGGCTATGATAGTGAGCTATGCTCAGCATGGAAAAGGTGCAGAGGCTTTAAAAGTGTATGACCTCATGAGGAAAGAAGGAACTAAACCTGATTCAGTAACATTTGTTGGTGTCTTATCTGCATGTAGTCATAATGGTATGGTTGAAGAAGGCTATTCCCATCTAAATTCAATGGCCAAAGAGTATGGAATTGAACCTGGTTACTACCATTATGCCTGTATGGTTGATCTTCTTGGGCGATCTGGAAGGCTGAAAGAGGCTGAAAGGTTCATTAACAATATGCCCATTGAACCTGATGCTTTGCTATGGGGAATATTGCTTGCTGCTTGCAAGGTACATGGGGATATTGAGCTTGGAAGGCTAGCGGCAAAAAGAGTCATTGAGTTGGAGCCCTGTGAAGCTGGAGCTTATGTCACCTTGTCAAACATCTGTGCAGATATGGGCTGGTGGGAAGATGTCATGAAGATCAGAAGCCTGATGGAGGGAACTGGGGTGAAGAAGGAACCTGGATGGAGTTCTGTGTGA 2271 0.4152 MRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWSSV* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0597 756 Gene3D Tetratricopeptide repeat domain 1 136 IPR011990 GO:0005515
Vvi17g0597 756 Gene3D Tetratricopeptide repeat domain 326 442 IPR011990 GO:0005515
Vvi17g0597 756 Gene3D Tetratricopeptide repeat domain 554 755 IPR011990 GO:0005515
Vvi17g0597 756 FunFam Pentatricopeptide repeat-containing protein At2g34400 536 756 - -
Vvi17g0597 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 648 IPR002885 -
Vvi17g0597 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 612 IPR002885 -
Vvi17g0597 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Vvi17g0597 756 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vvi17g0597 756 NCBIfam pentatricopeptide repeat 479 506 IPR002885 -
Vvi17g0597 756 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Vvi17g0597 756 NCBIfam pentatricopeptide repeat 580 614 IPR002885 -
Vvi17g0597 756 NCBIfam pentatricopeptide repeat 281 313 IPR002885 -
Vvi17g0597 756 NCBIfam pentatricopeptide repeat 378 411 IPR002885 -
Vvi17g0597 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vvi17g0597 756 Gene3D Tetratricopeptide repeat domain 137 226 IPR011990 GO:0005515
Vvi17g0597 756 Gene3D Tetratricopeptide repeat domain 227 325 IPR011990 GO:0005515
Vvi17g0597 756 Gene3D Tetratricopeptide repeat domain 443 531 IPR011990 GO:0005515
Vvi17g0597 756 FunFam Pentatricopeptide repeat-containing protein chloroplastic 291 441 - -
Vvi17g0597 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Vvi17g0597 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vvi17g0597 756 Pfam E motif 695 756 IPR046848 -
Vvi17g0597 756 Pfam PPR repeat 251 275 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat 281 310 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat 652 676 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat 480 506 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat 552 575 IPR002885 -
Vvi17g0597 756 FunFam Pentatricopeptide repeat-containing protein chloroplastic 134 236 - -
Vvi17g0597 756 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 425 756 IPR046960 GO:0003723|GO:0009451
Vvi17g0597 756 Pfam PPR repeat family 577 625 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat family 175 222 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat family 75 122 IPR002885 -
Vvi17g0597 756 Pfam PPR repeat family 375 422 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0597 Vvi-Chr17 6668795 6671065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0597 95 754 Glycoside Hydrolase AT3G49170 35.958 1.27e-133 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0597 - - vvi:100248528 1507.66