Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04202 ATGGAAACGGCGGGGCAGTGGCTGGAGAAGGCGTTGGTGGAACTGTGCTCGAAGATCGAAACGGGATTAGGTTTAAGTTTGGACGAAGAGATTATAAAAGGTCTTGTTTCTTACTGTGATCTCGCTCAGCCACGAGATGCTAAAGAGTACCTTGATAACATTATTGGTGAGGAAGTAGGGAAATCTGTGATTGAAGAATACTTAAGACGCCGAGGTTACTCGGAATTCAGCACCAAATCAGAAGTTCCAACTACTACTACTGCTGCTACTACCAAATTACATGCCTATGTCAAACCACCTTCAGTTGAAACATCTACTAGTGGATCTAGGAAATCGACGAGAACACCAAAAACCGTGGCTGTCCGTGGTGATAATGCACAACCTAACAAGAATGCTGTCGGTAGTAGTAATCAGGGAAATGGGATTCCAGCTACAGGTAGTGAATCAGGAACATCACAAAAAGGAAATCATGTGAGTTCCAGAAAGAAGAAAGCTGGGAAAACTATTTCACTTGCTGAGGCAGCGAAAGGGTCGATTGTTTTCCAGCAAGGAAGAACGTGTTCTTGTCAAGCACGTCGTCATAATCTAGTCAGCAATTGTTTATCTTGTGGTAAAATTGTTTGTGAGCAAGAAGGAGAGGGACCTTGCAATTTTTGTGGTGCACTTGTGTTGAAAGAGGGAAGCTCGTATGCTGGTTTGGAAGAAAGTTTGCCTCCCTTATCAGAGACTGAGGCTGCTGCTGAAGCTTACGCAAAGAGGCTTGTTGAATATGATCGAAATGCTGCAGCTCGTACAACAGTTATCGATGACCAAAGTGACTACTATGAGCTTGATTCAAATACTTGGTTGTCAAAAGAGGAGAAAGATTTGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCGGAACAAGCCAAACGGAACAGAGTCGTCGTGACTTTTGATCTAGTTGGCCGGAAGGTTCTTCTGAATCAAGATGAAGTTTCAGAATCACAATCCGACACTAGAATATTACGTGCACCCGATGAAAGGGAAATTAACCGCATCAAACCAAATCCATCTCTTAAGATTCAGCCAGTTTTTGTGGACCTGGGCTTCAGTAAGAAGTCTGCTAACGATAGGCAAGCAAACAAAGGTAAGCAATCAAATAAAGGCCTAAACAAGGGGCTGTGCTTGGAGATTACTGGAAGGGTGCAGCATGATAGCAGTAACTTGAAGTACCTTCAGCAAAACCAATTTGCAACAGATTCAAATGAAAAAAATTGGCAAGTACCTTCAGGAAATGGAGGACTGCACACAGAAGATGACGGTGAATGTTTACTAGACCTATGA 1329 0.4296 METAGQWLEKALVELCSKIETGLGLSLDEEIIKGLVSYCDLAQPRDAKEYLDNIIGEEVGKSVIEEYLRRRGYSEFSTKSEVPTTTTAATTKLHAYVKPPSVETSTSGSRKSTRTPKTVAVRGDNAQPNKNAVGSSNQGNGIPATGSESGTSQKGNHVSSRKKKAGKTISLAEAAKGSIVFQQGRTCSCQARRHNLVSNCLSCGKIVCEQEGEGPCNFCGALVLKEGSSYAGLEESLPPLSETEAAAEAYAKRLVEYDRNAAARTTVIDDQSDYYELDSNTWLSKEEKDLLKKKQEEMEEAEQAKRNRVVVTFDLVGRKVLLNQDEVSESQSDTRILRAPDEREINRIKPNPSLKIQPVFVDLGFSKKSANDRQANKGKQSNKGLNKGLCLEITGRVQHDSSNLKYLQQNQFATDSNEKNWQVPSGNGGLHTEDDGECLLDL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04202 442 MobiDBLite consensus disorder prediction 100 156 - -
Trre15g04202 442 Pfam Putative zinc finger motif, C2HC5-type 185 225 IPR009349 GO:0005634|GO:0006355|GO:0008270
Trre15g04202 442 Coils Coil 284 308 - -
Trre15g04202 442 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 6 419 IPR039128 -
Trre15g04202 442 MobiDBLite consensus disorder prediction 415 434 - -
Trre15g04202 442 Coils Coil 240 260 - -
Trre15g04202 442 MobiDBLite consensus disorder prediction 79 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04202 Trre-Chr15 52636193 52638672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04202 K23398 - gmx:100810833 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04202 15 52636193 52638672 Trre15g04202 15 52636193 52638672 ECH