Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03348 ATGGAATCGGCGGGAGAGTGGCTGGAGACGGCGTTGGTGGAGTTGTGTTCGAAGATTGAGACGGGTTTAGGGTTAGGTTTGGATGAAGAGATTATTAAAGGGCTTGTTTCTTACTGTGATCTTGCTCAGCCACGAGATGCTAAAGAATACCTTGATAATATTATTGGTCAAGAAGTAGGGAAACCTGTGATTGAAGAATACCTAAGACGGAGAGGTCACTCAGAATTTAGCACTAAATCAGATGTTCCAACTACTACATTACATGCCTATGTCAAACCACCTGCAGTTGAGACATCTGCTAGTGGGTCTAAGAAATCGATGAGAACACCAAAAACAGTAACTGTCCGCAGTGACCATGCAGAACCCAATAAAAATGTTGTTGGCAGTAGTAGGGACAATGGAATTCCGGCTACAGGTGGTGAATCAAAAACATCACAAAAAGGAAATCAAGTGAGTTCCAAAAAGAAGAAAGCTGGGAAAACTATTTCACTTGCTGAGGCGGCCAAGGGGTCGATTGTGTTCCAGCAAGGAAGACCGTGCTCTTGTCAAGCGCGTCGTCACATGCTGATCAGCAATTGCTTATCATGTGGTAAAATTGTTTGTGAGCAAGAAGGAGAGGGGCCTTGCAATTTTTGTGGTGCACTTGTGTTGAAAGAAGGTAGCTCATATGCTGGTCTGGAAGAAAGTTTGCCTCCCTTGTCAGATGCTGAGGCTGCTGCTGAAGCTTATGCAAAGAGGCTTGTCGATTATGACCGAAATGCCGCAGCTCGTACAACAGTTATTGATGACCAAAGTGACTACTATGAGCTTGATGGAAATACTTGGTTGTCAAAGGAGGAGAAAGACCTATTGAAGCAGAAACAAGAGGAGATGGAAGAAGCTGAACGAGCAAAACGGAATAAAGTTGTTGTGACTTTTGACCTAGTTGGCAGAAAGGTTCTTCTGAATCAAGATGAAGTTTCAGAATCAAAGTCCGACAATAGGATATTACGTGCACCAGATGAAAGAGAAGTGAACCGCATTAAACCAAACCCAACTCTTAAGATACAGCCAGTTTTTGTGGACCTGGGCTTCAGTAAGAAGTCTGCTAGCGATAGGCAAGCAAACAAAGGTAAGCAATCAAACAAAGGTTTAAACAAGGGGCTGTGTTTGGAGATTACTGGGAGGGTGCAGCATGATAGCAATGACTTGAAGTACCTTCAGCAAAGCCAATTCGCAACAGATTCAAATGAGAAAAATTGGCGAGTACCGTCAGGAAATGGAGGGCTGCATGTTGAAGACAATGGTGAATGTTTACTGGAACTATGA 1308 0.435 MESAGEWLETALVELCSKIETGLGLGLDEEIIKGLVSYCDLAQPRDAKEYLDNIIGQEVGKPVIEEYLRRRGHSEFSTKSDVPTTTLHAYVKPPAVETSASGSKKSMRTPKTVTVRSDHAEPNKNVVGSSRDNGIPATGGESKTSQKGNQVSSKKKKAGKTISLAEAAKGSIVFQQGRPCSCQARRHMLISNCLSCGKIVCEQEGEGPCNFCGALVLKEGSSYAGLEESLPPLSDAEAAAEAYAKRLVDYDRNAAARTTVIDDQSDYYELDGNTWLSKEEKDLLKQKQEEMEEAERAKRNKVVVTFDLVGRKVLLNQDEVSESKSDNRILRAPDEREVNRIKPNPTLKIQPVFVDLGFSKKSASDRQANKGKQSNKGLNKGLCLEITGRVQHDSNDLKYLQQSQFATDSNEKNWRVPSGNGGLHVEDNGECLLEL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03348 435 PANTHER THYROID RECEPTOR INTERACTING PROTEIN RELATED 6 404 IPR039128 -
Vifa4g03348 435 Coils Coil 277 304 - -
Vifa4g03348 435 MobiDBLite consensus disorder prediction 85 158 - -
Vifa4g03348 435 MobiDBLite consensus disorder prediction 123 157 - -
Vifa4g03348 435 Coils Coil 233 253 - -
Vifa4g03348 435 Pfam Putative zinc finger motif, C2HC5-type 178 218 IPR009349 GO:0005634|GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03348 Vifa-Chr4 1048553557 1048557148 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03348 K23398 - gmx:100810833 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03348 4 1048553557 1048557148 Vifa4g03348 4 1048553557 1048557148 ECH