Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1270 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1271 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01885 Bva06g03040 . . . . . . . . . . . . . . . . . . . . Lal17g0611 Lal4g0536 Lal21g0595 . . . Lan15g0604 Lan15g0604 Lan15g0604 . . . . . . . . . . . . . . . Lja1g4731 . . . . . . . . . . . . . . . . . Psa5g1691 . . . . . . . . . . . . . . . . . . . Sto9g2684 Sto5g1355 . . . . . . . . . . . . . . . . . .
Vvi16g1272 . . . . Adu10g01518 . . . . . . . . . . . . . Apr1g0609 . Arst10g01970 . Bach12g01032 . . . . Bva06g03039 . . . . . . . . . . . . . . . . . . . . Lal17g0609 . Lal21g0594 . . . Lan15g0606 . Lan15g0606 . . . Lapu9g01701 . Lasa5g03122 . . . . . . . . . Lja1g4732 . . . Mepo3g06631 . Mesa9g04178 . . . . . . . Phco7g01501 . . . Psa5g1696 . Pste2g03518 . . . . . Pumo10g01474 . Pvu9g0477 . Rops10g02176 . Seca4g02684 . Spst9g01539 . . . . Sto5g1352 . . . . . . Vian4g01297 . Vifa2g02944 . Vimu10g02034 . Viun9g02047 . Vivi3g02718 . . .
Vvi16g1273 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g03038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto9g2688 . . . . . . . . . . . . . . . . . . .
Vvi16g1274 Acco10g2585 . Accr4g00192 . Adu10g01505 . . . . . . . . . Alju08g0193 . . . Apr1g0611 . Arst10g01945 . . . Bisa09g0864 . Bva12g01887 Bva06g03037 . . . . Dere04g1280 . . . Enph1g1855 . Glsi08g0908 . . . . . . . . . Lal17g0608 Lal4g0534 Lal21g0593 . . . Lan15g0608 Lan15g0608 Lan15g0608 . . . Lapu9g01288 . Lasa5g03120 . Lele01g0153 Lele02g0159 Lele03g0161 Lele04g0156 . . . . Lja1g4734 . . . Mepo3g06629 . Mesa9g04171 . Mibi05g0162 . . . Phac9g01306 . Phco7g01498 . Prci15g0234 . Psa5g1700 . Pste2g03515 . . . . . . . Pvu9g0479 . Rops10g02174 . . . Spst9g01537 . . . Sto9g2690 . . . Trre5g04003 . . . Vian4g01299 . Vifa2g02941 . Vimu10g02041 . Viun9g02051 . Vivi3g02722 . . .
Vvi16g1275 Acco09g1794 . Accr7g00368 . Adu10g01504 . . . . . . . . . Alju08g0194 . . . Apr1g0612 . Arst10g01944 . . . Bisa09g0865 . Bva12g01888 Bva06g03036 . . . . Dere04g1279 . . . Enph1g1854 . Glsi08g0909 . . . . . . . . . Lal17g0606 . . . . . Lan15g0611 . . . . . Lapu9g01289 . Lasa5g03119 . Lele01g0154 Lele02g0160 Lele03g0162 Lele44g0270 . . . . Lja1g4736 . . . Mepo3g06627 . Mesa9g04169 . Mibi05g0163 . . . Phac9g01310 . Phco7g01497 . Prci15g0236 . . . Pste2g03513 . . . . . Pumo10g01472 . Pvu9g0480 . Rops10g02173 . Seca4g02679 . Spst9g01536 . . . . Sto5g1351 . . Trre5g04001 . . . Vian4g01300 . Vifa2g02939 . Vimu10g02042 . Viun9g02053 . Vivi3g02723 . . .
Vvi16g1276 . . . . Adu10g01500 . . . . . . . . . . . . . Apr1g0614 . . . Bach12g01028 . . . Bva12g01890 Bva06g03034 . . . . . . . . . . . . . . . . . . . . Lal17g0604 . . . . . Lan15g0613 . . . . . Lapu9g01291 . Lasa5g03111 . . . . . . . . . Lja1g4738 . . . Mepo3g06625 . Mesa9g04167 . . . . . Phac9g01312 . Phco7g01495 . . . Psa5g1710 . Pste2g03512 . . . . . Pumo10g01470 . Pvu9g0482 . Rops10g02171 . Seca4g02677 . Spst9g01533 . . . . Sto5g1349 . . Trre5g03997 . . . Vian4g01302 . Vifa2g02936 . Vimu10g02044 . Viun9g02055 . Vivi3g02730 . . .
Vvi16g1277 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva12g01892 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g1343 . . . . . . . . . . . . . . . . . .
Vvi16g1278 Acco10g2581 . Accr4g00198 . Adu10g01498 . . . . . . . . . Alju08g0198 . . . Apr1g0616 . Arst10g01937 . Bach2g00718 . Bisa09g0868 . Bva12g01893 Bva06g03026 . . . . Dere04g1276 . . . Enph1g1851 . Glsi08g0913 . . . . . . . . . Lal17g0603 Lal4g0530 Lal21g0591 . . . Lan15g0614 Lan15g0614 Lan15g0614 . . . Lapu9g01295 . . . Lele01g0157 Lele02g0162 Lele03g0165 Lele04g0161 . . . . Lja1g4745 . . . Mepo3g06615 . Mesa9g04161 . Mibi05g0166 . . . Phac9g01318 . Phco7g01487 . Prci15g0243 . Psa5g1716 . Pste2g03506 . . . . . Pumo10g01466 . Pvu9g0487 . Rops10g02167 . Seca4g02668 . Spst9g01530 . . . Sto9g2695 Sto5g1342 . . Trre5g03983 . . . Vian4g01310 . Vifa2g02933 . Vimu10g02053 . Viun9g02062 . . . . .
   
Previous Page 2337 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi16g1269 Chr16 21288668 21288999 -
Vvi Vvi16g1270 Chr16 21291233 21291719 -
Vvi Vvi16g1271 Chr16 21294900 21295835 -
Bva Bva12g01885 Chr12 15169451 15170834 +
Bva Bva06g03040 Chr06 18850464 18852179 -
Lal Lal17g0611 Chr17 4377794 4379733 -
Lal Lal4g0536 Chr4 3897580 3899713 -
Lal Lal21g0595 Chr21 4484957 4486631 -
Lan Lan15g0604 Chr15 13660662 13662566 +
Lan Lan15g0604 Chr15 13660662 13662566 +
Lan Lan15g0604 Chr15 13660662 13662566 +
Lja Lja1g4731 Chr1 63776402 63778209 +
Psa Psa5g1691 Chr5 131600278 131601990 +
Sto Sto9g2684 Chr9 28918688 28920314 +
Sto Sto5g1355 Chr5 9275939 9277466 -
Vvi Vvi16g1272 Chr16 21298093 21301537 -
Adu Adu10g01518 Chr10 66077172 66080052 -
Apr Apr1g0609 Chr1 7340778 7346462 +
Arst Arst10g01970 Chr10 65226738 65230957 -
Bach Bach12g01032 Chr12 7270111 7274379 -
Bva Bva06g03039 Chr06 18844533 18849036 -
Lal Lal17g0609 Chr17 4367714 4373296 -
Lal Lal21g0594 Chr21 4467651 4476594 -
Lan Lan15g0606 Chr15 13668687 13673867 +
Lan Lan15g0606 Chr15 13668687 13673867 +
Lapu Lapu9g01701 Chr9 31844524 31849951 +
Lasa Lasa5g03122 Chr5 536523179 536526496 -
Lja Lja1g4732 Chr1 63782906 63788133 +
Mepo Mepo3g06631 Chr3 80220650 80225694 -
Mesa Mesa9g04178 Chr9 74596373 74599514 -
Phco Phco7g01501 Chr7 14176728 14182554 -
Psa Psa5g1696 Chr5 131970852 131975958 +
Pste Pste2g03518 Chr2 36554018 36559226 -
Pumo Pumo10g01474 Chr10 19637364 19641062 -
Pvu Pvu9g0477 Chr9 8791153 8797323 +
Rops Rops10g02176 Chr10 39177501 39182981 -
Seca Seca4g02684 Chr4 46227469 46232332 -
Spst Spst9g01539 Chr9 15631615 15635198 -
Sto Sto5g1352 Chr5 9249220 9262998 -
Vian Vian4g01297 Chr4 26220979 26225177 +
Vifa Vifa2g02944 Chr2 838961587 838964789 -
Vimu Vimu10g02034 Chr10 29736616 29738859 +
Viun Viun9g02047 Chr9 30355322 30361096 +
Vivi Vivi3g02718 Chr3 45444335 45448796 +
Vvi Vvi16g1273 Chr16 21304768 21311485 +
Bva Bva06g03038 Chr06 18836978 18842915 -
Sto Sto9g2688 Chr9 28930422 28940876 +
Vvi Vvi16g1274 Chr16 21323206 21327419 +
Acco Acco10g2585 Chr10 36801317 36805605 -
Accr Accr4g00192 Chr4 1886105 1889833 +
Adu Adu10g01505 Chr10 65489371 65493482 -
Alju Alju08g0193 Chr08 1462904 1466617 +
Apr Apr1g0611 Chr1 7379600 7385788 -
Arst Arst10g01945 Chr10 64677240 64681003 -
Bisa Bisa09g0864 Chr09 12487574 12491508 +
Bva Bva12g01887 Chr12 15182582 15186744 +
Bva Bva06g03037 Chr06 18828205 18832674 -
Dere Dere04g1280 Chr04 14528565 14533349 -
Enph Enph1g1855 Chr1 43459651 43465764 -
Glsi Glsi08g0908 Chr08 6736175 6740871 +
Lal Lal17g0608 Chr17 4357089 4362198 -
Lal Lal4g0534 Chr4 3878675 3883567 -
Lal Lal21g0593 Chr21 4459816 4464913 -
Lan Lan15g0608 Chr15 13697301 13700939 +
Lan Lan15g0608 Chr15 13697301 13700939 +
Lan Lan15g0608 Chr15 13697301 13700939 +
Lapu Lapu9g01288 Chr9 26911752 26919363 +
Lasa Lasa5g03120 Chr5 536086788 536089552 -
Lele Lele01g0153 Chr01 885968 889928 +
Lele Lele02g0159 Chr02 879327 883381 +
Lele Lele03g0161 Chr03 860787 866119 +
Lele Lele04g0156 Chr04 882448 886146 +
Lja Lja1g4734 Chr1 63815970 63823409 +
Mepo Mepo3g06629 Chr3 80188366 80192831 -
Mesa Mesa9g04171 Chr9 74458431 74464118 -
Mibi Mibi05g0162 Chr05 1695094 1699152 +
Phac Phac9g01306 Chr9 10263013 10270182 +
Phco Phco7g01498 Chr7 14103879 14107987 -
Prci Prci15g0234 Chr15 1581672 1587615 +
Psa Psa5g1700 Chr5 132405264 132412582 +
Pste Pste2g03515 Chr2 36501918 36507112 -
Pvu Pvu9g0479 Chr9 8845213 8850164 +
Rops Rops10g02174 Chr10 39127961 39134648 -
Spst Spst9g01537 Chr9 15539971 15543932 -
Sto Sto9g2690 Chr9 28948431 28952355 +
Trre Trre5g04003 Chr5 41227795 41232096 -
Vian Vian4g01299 Chr4 26307648 26311742 +
Vifa Vifa2g02941 Chr2 837260496 837263544 -
Vimu Vimu10g02041 Chr10 29953215 29957465 +
Viun Viun9g02051 Chr9 30393205 30398168 +
Vivi Vivi3g02722 Chr3 45513806 45517334 +
Vvi Vvi16g1275 Chr16 21329695 21331591 -
Acco Acco09g1794 Chr09 34675366 34677332 +
Accr Accr7g00368 Chr7 4947258 4949201 -
Adu Adu10g01504 Chr10 65468870 65471530 +
Alju Alju08g0194 Chr08 1468973 1470333 -
Apr Apr1g0612 Chr1 7403116 7405432 -
Arst Arst10g01944 Chr10 64656827 64659208 +
Bisa Bisa09g0865 Chr09 12495285 12496427 -
Bva Bva12g01888 Chr12 15187882 15189900 -
Bva Bva06g03036 Chr06 18825137 18827001 +
Dere Dere04g1279 Chr04 14519873 14524908 +
Enph Enph1g1854 Chr1 43456705 43459118 +
Glsi Glsi08g0909 Chr08 6743498 6750364 -
Lal Lal17g0606 Chr17 4343726 4345869 +
Lan Lan15g0611 Chr15 13740708 13742559 -
Lapu Lapu9g01289 Chr9 26927258 26929370 -
Lasa Lasa5g03119 Chr5 535806062 535807250 +
Lele Lele01g0154 Chr01 892205 893528 -
Lele Lele02g0160 Chr02 884442 885897 -
Lele Lele03g0162 Chr03 867813 869201 -
Lele Lele44g0270 Chr44 1948414 1950290 +
Lja Lja1g4736 Chr1 63843091 63847086 -
Mepo Mepo3g06627 Chr3 80173909 80175844 +
Mesa Mesa9g04169 Chr9 74426389 74427775 +
Mibi Mibi05g0163 Chr05 1703261 1704617 -
Phac Phac9g01310 Chr9 10308099 10310059 -
Phco Phco7g01497 Chr7 14090258 14091647 +
Prci Prci15g0236 Chr15 1590168 1592002 -
Pste Pste2g03513 Chr2 36490728 36492851 +
Pumo Pumo10g01472 Chr10 19599924 19602377 +
Pvu Pvu9g0480 Chr9 8857219 8859531 -
Rops Rops10g02173 Chr10 39118581 39120463 +
Seca Seca4g02679 Chr4 46114965 46117210 +
Spst Spst9g01536 Chr9 15533588 15534987 +
Sto Sto5g1351 Chr5 9244940 9246425 +
Trre Trre5g04001 Chr5 41204934 41206844 +
Vian Vian4g01300 Chr4 26345737 26347111 -
Vifa Vifa2g02939 Chr2 836125490 836126765 +
Vimu Vimu10g02042 Chr10 29976493 29977907 -
Viun Viun9g02053 Chr9 30411509 30413637 -
Vivi Vivi3g02723 Chr3 45569954 45571493 -
Vvi Vvi16g1276 Chr16 21339256 21340019 -
Adu Adu10g01500 Chr10 64863421 64864582 +
Apr Apr1g0614 Chr1 7413640 7415507 -
Bach Bach12g01028 Chr12 7241864 7242640 +
Bva Bva12g01890 Chr12 15194979 15195978 -
Bva Bva06g03034 Chr06 18817505 18818557 +
Lal Lal17g0604 Chr17 4333636 4334799 +
Lan Lan15g0613 Chr15 13775180 13777253 -
Lapu Lapu9g01291 Chr9 26943408 26945049 -
Lasa Lasa5g03111 Chr5 535201464 535202159 -
Lja Lja1g4738 Chr1 63871031 63872810 -
Mepo Mepo3g06625 Chr3 80160134 80160571 +
Mesa Mesa9g04167 Chr9 74410539 74411665 +
Phac Phac9g01312 Chr9 10331664 10333449 -
Phco Phco7g01495 Chr7 14070652 14074531 +
Psa Psa5g1710 Chr5 132894463 132895282 +
Pste Pste2g03512 Chr2 36478397 36480031 +
Pumo Pumo10g01470 Chr10 19590772 19592780 +
Pvu Pvu9g0482 Chr9 8877172 8878789 -
Rops Rops10g02171 Chr10 39102473 39104034 +
Seca Seca4g02677 Chr4 46089308 46090735 +
Spst Spst9g01533 Chr9 15523626 15525135 +
Sto Sto5g1349 Chr5 9235452 9236500 +
Trre Trre5g03997 Chr5 41184708 41185571 +
Vian Vian4g01302 Chr4 26369357 26370951 -
Vifa Vifa2g02936 Chr2 834302301 834302996 +
Vimu Vimu10g02044 Chr10 30009661 30010017 -
Viun Viun9g02055 Chr9 30428661 30429970 -
Vivi Vivi3g02730 Chr3 45810766 45811141 -
Vvi Vvi16g1277 Chr16 21341512 21343257 +
Bva Bva12g01892 Chr12 15200080 15202067 +
Sto Sto5g1343 Chr5 9186991 9201592 -
Vvi Vvi16g1278 Chr16 21346760 21348557 -
Acco Acco10g2581 Chr10 36772403 36774916 +
Accr Accr4g00198 Chr4 1981863 1984359 -
Adu Adu10g01498 Chr10 64755301 64758231 +
Alju Alju08g0198 Chr08 1488177 1490706 -
Apr Apr1g0616 Chr1 7434516 7437834 -
Arst Arst10g01937 Chr10 64173383 64176331 -
Bach Bach2g00718 Chr2 15898825 15901253 -
Bisa Bisa09g0868 Chr09 12540771 12543079 -
Bva Bva12g01893 Chr12 15203313 15206479 -
Bva Bva06g03026 Chr06 18794744 18797681 +
Dere Dere04g1276 Chr04 14491974 14496085 +
Enph Enph1g1851 Chr1 43443768 43446830 +
Glsi Glsi08g0913 Chr08 6770055 6772706 -
Lal Lal17g0603 Chr17 4328680 4331672 +
Lal Lal4g0530 Chr4 3848790 3852396 +
Lal Lal21g0591 Chr21 4425955 4428564 +
Lan Lan15g0614 Chr15 13780052 13783105 -
Lan Lan15g0614 Chr15 13780052 13783105 -
Lan Lan15g0614 Chr15 13780052 13783105 -
Lapu Lapu9g01295 Chr9 27011678 27014287 -
Lele Lele01g0157 Chr01 904425 906805 -
Lele Lele02g0162 Chr02 895840 898674 -
Lele Lele03g0165 Chr03 881250 884527 -
Lele Lele04g0161 Chr04 901616 904290 -
Lja Lja1g4745 Chr1 64010232 64012929 -
Mepo Mepo3g06615 Chr3 80098155 80100478 +
Mesa Mesa9g04161 Chr9 74317048 74319494 +
Mibi Mibi05g0166 Chr05 1721800 1724413 -
Phac Phac9g01318 Chr9 10420585 10424439 -
Phco Phco7g01487 Chr7 13982262 13985113 +
Prci Prci15g0243 Chr15 1609447 1612576 -
Psa Psa5g1716 Chr5 133290461 133293150 -
Pste Pste2g03506 Chr2 36363216 36366116 +
Pumo Pumo10g01466 Chr10 19546524 19548046 +
Pvu Pvu9g0487 Chr9 8943875 8947363 -
Rops Rops10g02167 Chr10 39042004 39044779 +
Seca Seca4g02668 Chr4 45935429 45938645 +
Spst Spst9g01530 Chr9 15474120 15478487 +
Sto Sto9g2695 Chr9 28970651 28973165 -
Sto Sto5g1342 Chr5 9183288 9185475 +
Trre Trre5g03983 Chr5 41069292 41071837 +
Vian Vian4g01310 Chr4 26518620 26521261 -
Vifa Vifa2g02933 Chr2 833724953 833726656 +
Vimu Vimu10g02053 Chr10 30148743 30149845 -
Viun Viun9g02062 Chr9 30513920 30517054 -
Lapu Lapu9g01701 Chr9 31844524 31849951 +