Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01501 ATGAGAAGTAAAATTTGGAGGTCCAAACCCCTTTGGGTCCATAAATTGGTTCAACCCTACACTTTTGCCACCTACACTGCTCTGCTCTCCTCCTTGGAAGTGTCGTGTTTCTCAACTTCAGCCTCGTCAAGAAGAAGGGTTCGATTGGGTCCTGTAGCTGTTCCTTCTCTGTTTCTGATGACAAGCGCTTGGACAAATATGAGCTTTGCACTCAAACATAGGGATATAGAAAGGGAATGGGAGAATCGGGGTGGAGTTATGCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAGCTTGTGGAGCACGGCTCACCTCAAGGATTGCTCTCTTGGTTTGCTTCATAGTTTTGGTTTTATTTATTTTTGTGAGAGAAATCCCCCTCTTTACTGATGAGCTTCAAATTTTGTTTGTGGACAGACTGTATAACATATCAAACATGAGTGGTCGCTTTTCTCGCACAATTTACGTAGGCAACCTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGAGTAATGGACATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCGATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGACCATCATCCAGTGATCGACGTGGATATGGTGGAAGTGGGGGTGGGGGTGGGGGTGGGGCTAGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGCACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCAAGAGCCTATATTCGGGTGAGAAAGTACGAGGGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCGAAAAGGGTCAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCACGATCAGCATCACCAATCAAATCTTCAAGGCCAAGATCACGCTCACGGTCTGGATCTCCTCGCCAGGTGCTTTCAGGTAGTGGATGA 1218 0.4606 MRSKIWRSKPLWVHKLVQPYTFATYTALLSSLEVSCFSTSASSRRRVRLGPVAVPSLFLMTSAWTNMSFALKHRDIEREWENRGGVMLWSILEQMSNGACGARLTSRIALLVCFIVLVLFIFVREIPLFTDELQILFVDRLYNISNMSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRVMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGGGGASGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01501 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 342 IPR000504 GO:0003723
Phco7g01501 405 FunFam serine/arginine-rich splicing factor SR34A-like 148 263 - -
Phco7g01501 405 CDD RRM1_SF2_plant_like 154 225 - -
Phco7g01501 405 FunFam serine/arginine-rich splicing factor SR34A-like 264 341 - -
Phco7g01501 405 MobiDBLite consensus disorder prediction 227 254 - -
Phco7g01501 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 228 IPR000504 GO:0003723
Phco7g01501 405 MobiDBLite consensus disorder prediction 341 405 - -
Phco7g01501 405 SMART rrm1_1 265 334 IPR000504 GO:0003723
Phco7g01501 405 SMART rrm1_1 154 224 IPR000504 GO:0003723
Phco7g01501 405 CDD RRM2_SF2_plant_like 264 339 - -
Phco7g01501 405 MobiDBLite consensus disorder prediction 360 374 - -
Phco7g01501 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 222 IPR000504 GO:0003723
Phco7g01501 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 328 IPR000504 GO:0003723
Phco7g01501 405 Gene3D - 145 262 IPR012677 -
Phco7g01501 405 MobiDBLite consensus disorder prediction 375 405 - -
Phco7g01501 405 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 147 397 - -
Phco7g01501 405 Gene3D - 264 341 IPR012677 -
Phco7g01501 405 SUPERFAMILY RNA-binding domain, RBD 152 333 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01501 Phco-Chr7 14176728 14182554 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01501 7 14176728 14182554 Phco7g01501 7 14176728 14182554 ECH