Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1273 ATGGCCTCCCGTTTCCAAGCCGCTTCGCTCGTGGCTTCGCCGTCGTACCCCAATGCCGTCGCCTGGTCCGACGAGAACCTCATCGCCGTCGCCACCGGCCACCTCGTCACCATACTGAATCCGGCATTGCCATTTGGACCGCGAGGTTTGATAACGATTCCGGCCAACAAGCCCTTTCCGATTGGGGTGATAGAAAGACAAGATTTATACTCAGGCTGCTTGTTGAGCACTTGTTTATCACGAGACATCCGACCATGTGTTAGATCAATTTCATGGTCACATATAGGATTGGCTCCTAATGCAGGATGCTTGCTTGCTATTTGCACCATAGAAGGACGTGTGAAGCTGTATCGTGCACCATTTTGTGAGTTCCAAGTTGAGTGGGTAGAGGTTGTGGATATAACAGACATGCTCTATGATTATCTTGCAAATATTAGTTTTGGAGAGTCAGAAACTGCTGTATCTTCTGATGTGTTTCAGCCACATTCTGGCAAGTTGGAAGGAAATAATCCACTTCAAATTGTTTATAAGCGTACATCTAAAGCGAGATCACTCAAGAAGATAGGAGAAGATTGCACATATAAAACGAGATCACTCAAGAAGATAGGAGAAGACTGCACTCTCCCACTGGTAACTGTGAATCAATATGCTTCTCGCAATGCAATGCTGTCATCACTGGTTGTTGCCTGGTCGCCAGTGCTGTGTTTACCACCTGAAACCGATTCAGCTCCTCCAGATAACTCATCCAACTGCTTTTCTCTACTTGCAGTTGGTGGGAAATCTGGTAAAATTTCCTTTTGGAGAGTTCATGAACCGCTATCCTATACTGTTGAGCACAGCAGGGTTCCCATCAGTGTGATGCTTGCTGGATTCCATCAGGCACATAACACATGGGTCACTGCAATCAGTTGGGCATTACTAACTTCTGATGCTTCAAGTCCTCAGGTTTTACTTGCTACAGGGAGTACAGATGGGAGTGTGAAGATTTGGCTAGAATACAGTGAGAAATTGCTGAAATCATCTGAGGTCAATGATCCCCCTTTCTCATTGTTGAAAGAGGTTATAAATGCTGATTCTGTCCCAGTTTCAGTTCTCACGCTTATTGTGCCTGTACAATCACCACAGAAGATGTTCTTAGCAGTTGGCAAGGGATGTGGATCTTTTGAAGTATGGATATGTGATTTATCTATCAGAAAATTTGATAGAATCGGCTCATATAATGCACATGATCATGTTGTTACAGGTTTAGCTTGGGCTTTCGATGGATGTTGTTTGTACAGCTGCAGCCAGGATAATTCTGTGCGTAGCTGGAGTTTATGTGGGAATTCCCTCGATGAAGTACCCATTCCTCCAAATACTCCTGGTGTAAAGAACCCTGCCGATGACCTCCCATATTTATTTGGTTCATGCTATGGTGTAGCAGTATCCCCTGGAAATCTGGTGGTTGCTGTGGCTCGTGGTTTTGATGCTGGTCTATTGAATCCAATGTATCAGGCAAGGACTCAAAAGGCTGCCATTGAGTTCTTCTGGATAGGTGGGCAACAACTTGAAAGTTCAACAAACAGAAACCTAGAGTTTGGTATTGAAAATTTTCCTGGTTTTCCTAAGAAGGAATTGATTTATTGGGAGTGTAATATGTTGTGGTATTTAAGTCAATATGAGCATCTGGATAAGCCTTTGGTAGTTTGGGATATAGTTGCAGCATTGTTGGCTTTCAAGCAGTCTGCACCTAAGTATGTGGAACTTGTACTGGTTAAGTGGCTCTCAGTTTCAAATGTGGAATCCCATCTGGGCCTTTCAACAGGAAATATTTTGTCTCATGCCTCCAGAACTTTCTCAAATACTACTACCCGAAAGTTGCACCTTTTCAATATCATCTGTAGACATGTAGTACTATCTGAGCTGAAGGCAGATAAAATTAACAGCAAACAGCCTAATCTAGAAGAATTTGGTGGTGCTGAGGAGGAAAAACTGAAGTTGTGGATGGAGCTACTTCTTTGCAGTGAAAGAGAACTCCGTGAAAGGCTTGTGGGTTTTGCTTTTTCTACTGTTTTAGGTCTCATGTCCTCTTTGGCTGCAAAAGTTTATAGAGCTGAGGGCTGGGATCCTGTTGGATTAGCACAAATGGAGCAGTGGGTTGCACTTAATTATGATCATGTACAGGATCAACTAAAACTCCTTGCATCAGAAGTTAGAAACCTTGATAAGAGGAAGCTGCATTCTGTTTGTGAATATGTAGCAGGGGAGCAATGTAGCTATTGTTCAGCATCTGTTCCATTTGAATCTCCAGAGATTGCTTTTTGCCAAGGTGCAAAGTGCAGTGGTGGGGTTGGTCAGAGCCATAAACTAGCACGGTGTGCCGTTTGCATGCAGGTCTGCCCTCCTACATCCTCCTGGTTTTGCACGTGTTGTCAGAGATATTCTTCAAAACTGGCTCCCCCACAATTTTTTCTCATGCCCAGATATCCACTGGATTTCAAGTCTTCAACTGAATCCTGCACCTTAAACAGTTTCTCTAAACCCTTCTGCCCCTTCTGTGGAATACTGCTACAAAGATTACAACCGGTATTTCTACTCTCTGCATCACCAGCATAA 2595 0.4374 MASRFQAASLVASPSYPNAVAWSDENLIAVATGHLVTILNPALPFGPRGLITIPANKPFPIGVIERQDLYSGCLLSTCLSRDIRPCVRSISWSHIGLAPNAGCLLAICTIEGRVKLYRAPFCEFQVEWVEVVDITDMLYDYLANISFGESETAVSSDVFQPHSGKLEGNNPLQIVYKRTSKARSLKKIGEDCTYKTRSLKKIGEDCTLPLVTVNQYASRNAMLSSLVVAWSPVLCLPPETDSAPPDNSSNCFSLLAVGGKSGKISFWRVHEPLSYTVEHSRVPISVMLAGFHQAHNTWVTAISWALLTSDASSPQVLLATGSTDGSVKIWLEYSEKLLKSSEVNDPPFSLLKEVINADSVPVSVLTLIVPVQSPQKMFLAVGKGCGSFEVWICDLSIRKFDRIGSYNAHDHVVTGLAWAFDGCCLYSCSQDNSVRSWSLCGNSLDEVPIPPNTPGVKNPADDLPYLFGSCYGVAVSPGNLVVAVARGFDAGLLNPMYQARTQKAAIEFFWIGGQQLESSTNRNLEFGIENFPGFPKKELIYWECNMLWYLSQYEHLDKPLVVWDIVAALLAFKQSAPKYVELVLVKWLSVSNVESHLGLSTGNILSHASRTFSNTTTRKLHLFNIICRHVVLSELKADKINSKQPNLEEFGGAEEEKLKLWMELLLCSERELRERLVGFAFSTVLGLMSSLAAKVYRAEGWDPVGLAQMEQWVALNYDHVQDQLKLLASEVRNLDKRKLHSVCEYVAGEQCSYCSASVPFESPEIAFCQGAKCSGGVGQSHKLARCAVCMQVCPPTSSWFCTCCQRYSSKLAPPQFFLMPRYPLDFKSSTESCTLNSFSKPFCPFCGILLQRLQPVFLLSASPA* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1273 864 SUPERFAMILY WD40 repeat-like 10 487 IPR036322 GO:0005515
Vvi16g1273 864 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 330 IPR001680 GO:0005515
Vvi16g1273 864 Coils Coil 717 737 - -
Vvi16g1273 864 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 439 IPR001680 GO:0005515
Vvi16g1273 864 Pfam WD domain, G-beta repeat 403 438 IPR001680 GO:0005515
Vvi16g1273 864 Pfam WD domain, G-beta repeat 293 330 IPR001680 GO:0005515
Vvi16g1273 864 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 439 - -
Vvi16g1273 864 Gene3D - 204 525 IPR015943 GO:0005515
Vvi16g1273 864 SMART WD40_4 71 118 IPR001680 GO:0005515
Vvi16g1273 864 SMART WD40_4 3 40 IPR001680 GO:0005515
Vvi16g1273 864 SMART WD40_4 285 331 IPR001680 GO:0005515
Vvi16g1273 864 SMART WD40_4 399 438 IPR001680 GO:0005515
Vvi16g1273 864 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY 3 863 IPR044230 GO:0000127|GO:0004402|GO:0006384
Vvi16g1273 864 Pfam Transcription factor IIIC subunit delta N-term 14 151 IPR024761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1273 Vvi-Chr16 21304768 21311485 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1273 - - vvi:100853102 1754.57