Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1352 ATGGAGCAAATGAGCAATGGAGCTTGTGGAGCACGGCTCATCTCGAGGATTGCTCTCTTGTTTGACAATGCACGAGATGCCGAAGACGCAATTCGGGGGCGTGATGGCTACAACTTTGATGGATGTCGGTTAAGGGTGGAACTTGCACATGGTGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGACAGTGAGGGTACATTCGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTGTGAAGAAATATGAGGCCAGTCCCTCGAGAAGCCGCAGTAGAAGCCGCAGCAGAAGCCCTGCCAGAAGCAGGAGTCCTAAAAGGATTAGAAGGTACAGCTGTCACATTCTGTTATTTATTCTTGCTGCCAAGATCACCATCACGGTCCCGGTCCAGGTCACTATCTGGTTCGCCACGCCAGGCACGGTCAGGCAGTGGTTGATTTATGATTCACCCACCAATGTAGCAGGATTCGGAGCTAGTTACAATTACTCATGCAATGTTGAGAATGCTGGGGTCATAATCGGCTCGACCAGTCAAAATTTGGACAACAGTGTAGTGTCCTCAGACTCAACTCTATCAAATGAGTTGGAGAAATCGAAACCCAGAACTGGTTCCATCGGAAATGGCATAGAGGCAAATGTTCAGCCCATCAATGGTGATCAGAATCTGAACGGCGTCTTCAACCACCAGGACATGGTTCCGGCGGCCGTATCAGTCCCCAACAATAATTACAAGCCTCAAATGGCTCAGATGCGAAATGGGTTTGAAGGAAATGATGTCCAGAACCAGCAGATGGTGATGAATAATGGTGGCTATGGGATTAACCAGATGTCTAACGGAGTGAGAAACGGAGACGACGACGGTGGCGAAAATTTCAAGCGAGATATGAGGGATTTGGAGGAACTGCTGTCCAAGTTAAATCCCATGGCTGAAGAATTTGTGCCTCCATCGCTTACTAAGAATCATGGGTTCTTAGGCGGCGGCGGATTTGGCTACATTAACAATTTTCTGCTACCAGCTAACTACGGCAATGCCAATGGGAATACTAACAGAAggAGGAAGAATGGCTATAATCAGGGAAAGCGCAGGGTGAATCATAAAATGGATatggagaagagagaagagatgATTAGAAGAACCGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGCACCTTTTGTCTGGGCCAAAGGTTGTTGATTGTCGTGTATGCGGGGATCCAAATTCTATCCTTCGTTTTGCCTTCATTGAGTTTACAGATGAAGAAGGTGCTAGGGCTGCTTTGAATCTGTCTGGTACCATGCTTGGATATTATCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATTGCACCAGTTAACCCAACATTTTTGCCCAGGGTTACTCAGGCAGATCTCAAACACTTCTTTGAATCTCTTTGTGGAGAGGTTCATCGCTTGAGGCTTCTTGGTGATTACCATCATTCTACTCGAATTGCATTTGTGGAGTTCATGATGGCTGAAGGTGCGATTTTAGCTCTGAACTGTAGTGGTGTGATATTGGGTACACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGGTCACGTGCCCCTCGGTCTCCAACGAACTGA 1728 0.4612 MEQMSNGACGARLISRIALLFDNARDAEDAIRGRDGYNFDGCRLRVELAHGVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAVKKYEASPSRSRSRSRSRSPARSRSPKRIRRYSCHILLFILAAKITITVPVQVTIWFATPGTVRQWLIYDSPTNVAGFGASYNYSCNVENAGVIIGSTSQNLDNSVVSSDSTLSNELEKSKPRTGSIGNGIEANVQPINGDQNLNGVFNHQDMVPAAVSVPNNNYKPQMAQMRNGFEGNDVQNQQMVMNNGGYGINQMSNGVRNGDDDGGENFKRDMRDLEELLSKLNPMAEEFVPPSLTKNHGFLGGGGFGYINNFLLPANYGNANGNTNRRRKNGYNQGKRRVNHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQHLLSGPKVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRVTQADLKHFFESLCGEVHRLRLLGDYHHSTRIAFVEFMMAEGAILALNCSGVILGTLPIRVSPSKTPVRSRAPRSPTN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1352 575 SUPERFAMILY RNA-binding domain, RBD 496 569 IPR035979 GO:0003676
Sto5g1352 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 485 IPR000504 GO:0003723
Sto5g1352 575 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 191 497 - -
Sto5g1352 575 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 497 574 - -
Sto5g1352 575 MobiDBLite consensus disorder prediction 209 232 - -
Sto5g1352 575 Gene3D - 50 121 IPR012677 -
Sto5g1352 575 SUPERFAMILY RNA-binding domain, RBD 20 107 IPR035979 GO:0003676
Sto5g1352 575 CDD RRM1_CID8_like 401 487 IPR034823 -
Sto5g1352 575 Pfam Ataxin-2 C-terminal region 327 341 IPR009818 -
Sto5g1352 575 MobiDBLite consensus disorder prediction 108 130 - -
Sto5g1352 575 Gene3D - 365 487 IPR012677 -
Sto5g1352 575 Gene3D - 494 570 IPR012677 -
Sto5g1352 575 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 191 497 - -
Sto5g1352 575 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 497 574 - -
Sto5g1352 575 SMART rrm1_1 51 119 IPR000504 GO:0003723
Sto5g1352 575 SMART rrm1_1 484 559 IPR000504 GO:0003723
Sto5g1352 575 SMART rrm1_1 404 481 IPR000504 GO:0003723
Sto5g1352 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 483 563 IPR000504 GO:0003723
Sto5g1352 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 496 552 IPR000504 GO:0003723
Sto5g1352 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 474 IPR000504 GO:0003723
Sto5g1352 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 107 IPR000504 GO:0003723
Sto5g1352 575 SUPERFAMILY RNA-binding domain, RBD 377 486 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1352 Sto-Chr5 9249220 9262998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1352 - - aip:107622933 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1352 5 9249220 9262998 Sto5g1352 5 9249220 9262998 ECH