Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2688 ATGGCCTCTCCTCCATTACAGCCCGCCATGCTGCTCGGTTCACCTTCATACCCGAACGCCATTGCCTGGTCTCAGGAGAATTTGATTGCCGTTGCTTCCGGTCACATCGTCACTATACTGAGACCAGAATTGCCTCATGGACCACGTGGCATAATTACAGTCTCCGATAGTGAACCCTTACCCATTGGGGTGGTAGAAAGAAAAGATATACTTTCTGGAGGCCTCCTGCCAGTATGTTTGGCTCGAGATGATAAGCCTAGTGTTCGATCAATATCATGGTCTCCACTTGGCATGGCAGCAAACTCAGGGTGCTTGATGGCTGTTTGCACCACAGAAGGAAATGTGAAGGTTTATCGTCCGCCTTTCTGTGATTACTGTGCTGAATGGATTGAGGTTTTAGATATAACAGAAAGGATGTATGAATATCTTCAATTTACTCAGTTTGGAGATTTGAATATTCCTTCAATCAATCAATCTCAGATGCAAGTAGCAGTGCAAAGATCACCTGGTGACATGCCATACACTTTATCTAGGAAGAAACATAAGCAAAGTAAAGGAGATTTTGGGAACCAATTGTTGTTGCCAGCAATTAGTGAGGATGGAAATTCTTGTTCAAGCCCCAACAATGATATGGAAGGACAGAGATTGAATACAGTGTCTGAGATAGTTAGCTCCGGCCTGCTGGTCAGTTCATCAGATCAATCTGTGCCTAAATCTAAAGCAAAGTCCTTGGAAAAAATATCTGAGAACCACACGTTACCACTGATAACTGCTGATCAATATGCTTCTCGTAGTGCAATGCTATTTTCACTTGTTGTTTCGTGGTCTCCATTGCTGTATGTAACATCTGAATTTCATCCAGTTCCTAATACTAATGCATCTGTCAGTCTACTTGCTGTTGGAGGGAAGAGTGGTAAAATTTCTTTCTGGAGATTTCATGAACCAGATTGCTATACTATTCAGGATGGTAATGTCCGAATTGCTGTTAAGTTTGTTGGACTTCTACAGGCGCACAATTCATGGGTTTCATCAATTAGTTGGGTGTTATTTACTTCTTATTCTtcaaattctcaaattttattagcTACTGGAAGTTCTGATGGGAGTGTGAAGGTTTGGCTGGCGAACAATGACAAATTACTGAAATCATCAGAAGTGAATGAAAGTCTATTTTCTTTGTTGAAGGAGGTTATAACTGTCAATGTTGTCCCAGTTTCTGTACTTTCAGCAACTGTGCCAATTCAGTCTTCTTCCGAGATGCTTTTAGCCATTGGCAAAGGTTCTGGTTCCTTTGAAATATGGCTTTGTGACATATCTTGTCATAAATTTCATAAGCTTGGATCATATGATGCACATGATCAtgttGTTACAGGTTTGGTCTGGGCATTTAATGGAAGATATTTGTGCAGCTGTAGCCAGGATAATTTAGTACGTAGCTGGATTTTGCGTGAGAGATGCCTCGATGAAGTTACCATCAGTTCCGACATCCTCAATGGTAGCAATCCATCTCGTCCTTCATCAGATGTATATGATTCATGTTTTGGTGCAGCAGTGTCCCCTGGGAATCTTGTCATTGCTACCGTCCATTGCTTTGATATTGAGAAATTGAACCGAATGTATGAAGCAAGGGTTTTGAGGGCAGCTATTGAATACTTTTGGATTGGTGGGCAGCAAATGGATGTTCTGTCAACAAATCCCTTTCAATTAGAGTCTGAGGAATATCCCTGTTTTCCAAATAAAGAATTAACCTTTTGGGAGTCCAATATTATTTGCTCTCTGATGCAATTTTATTGTCCCGATAAGCCTCTGGTTCTTTGGGATATAATTGCAGCATTGTTGGCTTTCAAGGAGCATGAGTCAATATATCTAGAACATATACTGATTAAGTGGCTCTCAACGTCATTTTTGGGATCTCATATGGACCTTCCTGATGAAAAGGTTTTGTCACATATCCCTTCAAATTTGTCAGATATTCCTTCTCGCCTGCTGCACCTGCTCAATATAATCTGTAGACGCGTGATGTTAGCAGAGATGGATGCTgatcaaataaatatattaaacaacCAAGTTTTAAACACTGGAGGGCCATGCCTTTCCGAGGAAAAGCAAATAACTAAGTGGGTAGAGATTCTTCTGAGCAGTGAAAGAGAACTCCGTGAAAGGCTGGTGAGTTTTAGTTTTTCTGCTTTCCTAACCAACACGTCCTATCCAGAAGAAACTCCTTCCCGACCAGGCCATTGGTATCCTTCTGGAATAGCGCAGATGAAGCAATGGGTGGAATTAGATGGGGATCATACACGTGACCAATTGAAAATGCTTGCATCAGTAGTTAAGGATGATAAAAGGTTTGTGTCCAGTGAACATATAGCCGCGGAGCGATGCAGTTTTTGTTCATCATCTGTTCATTTTGAATCCCCTGAGATTGGCTTTTGCTCAGGTGAGGGTTACAGGAGTGGCAGTGGTCAGCGTCACAGATTATTGAGATGTGCCGTCAGTATGCAGCTTCTCGTCGCCATGCTCAAGCAATTCCTCAGTAAGCTTCCTTGGAAGTCTTCCAAATTTGACGGGGAGGAGTCACATCGGGATGATTCTTCACGTTCCAGCAACTCAGTAGCTGCTTCACCACGCGTCACCGGTAGGGCTAATCAGTCGAACATTGGGAGTTCTTCCAGTCGATCCAATGCTCCAAAACGCACTTCTTCATCGGCGATTTTCCCAGCGAGCATCGTTTCTGGGAAGAACAAGGAGAGAGAAGATAAACCTGTTTGTGAAGAAGATGGtgaagatggtgtgtga 2796 0.4167 MASPPLQPAMLLGSPSYPNAIAWSQENLIAVASGHIVTILRPELPHGPRGIITVSDSEPLPIGVVERKDILSGGLLPVCLARDDKPSVRSISWSPLGMAANSGCLMAVCTTEGNVKVYRPPFCDYCAEWIEVLDITERMYEYLQFTQFGDLNIPSINQSQMQVAVQRSPGDMPYTLSRKKHKQSKGDFGNQLLLPAISEDGNSCSSPNNDMEGQRLNTVSEIVSSGLLVSSSDQSVPKSKAKSLEKISENHTLPLITADQYASRSAMLFSLVVSWSPLLYVTSEFHPVPNTNASVSLLAVGGKSGKISFWRFHEPDCYTIQDGNVRIAVKFVGLLQAHNSWVSSISWVLFTSYSSNSQILLATGSSDGSVKVWLANNDKLLKSSEVNESLFSLLKEVITVNVVPVSVLSATVPIQSSSEMLLAIGKGSGSFEIWLCDISCHKFHKLGSYDAHDHVVTGLVWAFNGRYLCSCSQDNLVRSWILRERCLDEVTISSDILNGSNPSRPSSDVYDSCFGAAVSPGNLVIATVHCFDIEKLNRMYEARVLRAAIEYFWIGGQQMDVLSTNPFQLESEEYPCFPNKELTFWESNIICSLMQFYCPDKPLVLWDIIAALLAFKEHESIYLEHILIKWLSTSFLGSHMDLPDEKVLSHIPSNLSDIPSRLLHLLNIICRRVMLAEMDADQINILNNQVLNTGGPCLSEEKQITKWVEILLSSERELRERLVSFSFSAFLTNTSYPEETPSRPGHWYPSGIAQMKQWVELDGDHTRDQLKMLASVVKDDKRFVSSEHIAAERCSFCSSSVHFESPEIGFCSGEGYRSGSGQRHRLLRCAVSMQLLVAMLKQFLSKLPWKSSKFDGEESHRDDSSRSSNSVAASPRVTGRANQSNIGSSSSRSNAPKRTSSSAIFPASIVSGKNKEREDKPVCEEDGEDGV 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2688 931 SMART WD40_4 72 119 IPR001680 GO:0005515
Sto9g2688 931 SMART WD40_4 442 481 IPR001680 GO:0005515
Sto9g2688 931 SMART WD40_4 328 374 IPR001680 GO:0005515
Sto9g2688 931 SMART WD40_4 268 311 IPR001680 GO:0005515
Sto9g2688 931 Gene3D - 11 388 IPR015943 GO:0005515
Sto9g2688 931 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY 5 837 IPR044230 GO:0000127|GO:0004402|GO:0006384
Sto9g2688 931 Pfam WD domain, G-beta repeat 445 480 IPR001680 GO:0005515
Sto9g2688 931 Pfam WD domain, G-beta repeat 334 373 IPR001680 GO:0005515
Sto9g2688 931 MobiDBLite consensus disorder prediction 866 908 - -
Sto9g2688 931 Gene3D - 412 496 IPR015943 GO:0005515
Sto9g2688 931 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 480 IPR001680 GO:0005515
Sto9g2688 931 Pfam Transcription factor IIIC subunit delta N-term 15 164 IPR024761 -
Sto9g2688 931 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 5 837 - -
Sto9g2688 931 SUPERFAMILY WD40 repeat-like 9 480 IPR036322 GO:0005515
Sto9g2688 931 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 383 IPR001680 GO:0005515
Sto9g2688 931 MobiDBLite consensus disorder prediction 854 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2688 Sto-Chr9 28930422 28940876 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2688 - - qlo:115960786 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2688 9 28930422 28940876 Sto9g2688 9 28930422 28940876 ECH