Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi16g1019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1020 . . . . . . . . . . . . . . . . . . . Apr6g0621 . . . . . . Bva03g01300 Bva04g01200 . . . . . . . . . . . . . . . . . . . . . Lal2g0957 Lal9g0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1021 . . . . . . . Aed7g0668 . . . . . . . . . . . Apr6g0619 . . . . . . Bva03g01299 . . . . Cca08g00751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra1g1726
Vvi16g1022 . . . . . . . . . . . . . . . . . . . Apr6g0618 . . . . . . Bva03g01298 Bva04g01201 . . . . . . . . . . . . . . . . . . . . . Lal2g0959 Lal9g0849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1024 . . . . . . Aed1g2315 . . Aev09g2182 . Ahy19g3589 . Aip09g04047 . . . . . . . . . . . . Bva03g01297 . . . Cca02g02205 . . . . Dod06g0847 . . . . Gma10g02184 . . . Gso10g2053 . . . . . . . . Lal13g0060 . . . . . . . . . . . . . . . . . . . Lja5g0676 Mal1g2111 . . . . . . . Mtr1g3694 . . . . . . . Psa6g4460 . . . . . . . . . . . . . . . . . Ssu7g0841 . . . Tpr1g0810 . . . Tsu01g04363 . . . . . . . . . . . Vra8g2190 .
Vvi16g1025 . . . . . . . Aed11g1749 . . . . . . . . . . . . . . . . . . . . . . . Cca06g01825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g2901 . . . . . . . . . . . . . . . . . . . Vra11g0251
Vvi16g1026 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva04g01202 . . . . . . . . . . . . Gma09g01219 . . . Gso9g1052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1027 . . . . . . . . . . Ahy15g3617 . Aip05g03932 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g1028 . . . . . . . . . . Ahy15g3618 . Aip05g03933 . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma09g01205 . . . Gso9g1041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Aed Aed11g1749 Chr11 21016619 21017230 +
Cca Cca06g01825 Chr06 33677034 33678695 +
Ssu Ssu2g2901 Chr2 90334610 90335266 +
Vra Vra11g0251 Chr11 1725874 1726752 -
Vvi Vvi16g1019 Chr16 18473818 18473961 +
Vvi Vvi16g1020 Chr16 18484619 18489671 +
Apr Apr6g0621 Chr6 9063244 9068885 -
Bva Bva03g01300 Chr03 12668106 12672523 -
Bva Bva04g01200 Chr04 8192624 8204951 +
Lal Lal2g0957 Chr2 6393741 6399409 +
Lal Lal9g0842 Chr9 6146108 6155134 +
Vvi Vvi16g1021 Chr16 18494181 18503321 +
Aed Aed7g0668 Chr7 4923328 4936239 +
Apr Apr6g0619 Chr6 9035614 9036986 -
Bva Bva03g01299 Chr03 12665892 12667439 -
Cca Cca08g00751 Chr08 14438326 14440159 +
Vra Vra1g1726 Chr1 32466050 32467686 -
Vvi Vvi16g1022 Chr16 18520803 18522209 +
Apr Apr6g0618 Chr6 8995937 8997432 -
Bva Bva03g01298 Chr03 12662835 12664503 -
Bva Bva04g01201 Chr04 8206823 8208432 +
Lal Lal2g0959 Chr2 6413624 6415039 +
Lal Lal9g0849 Chr9 6216242 6231705 +
Vvi Vvi16g1023 Chr16 18525704 18527116 +
Vvi Vvi16g1024 Chr16 18530377 18532170 -
Aed Aed1g2315 Chr1 19184497 19187481 -
Aev Aev09g2182 Chr09 24685740 24687524 +
Ahy Ahy19g3589 Chr19 158499610 158501941 -
Aip Aip09g04047 Chr09 146749309 146751560 -
Bva Bva03g01297 Chr03 12658584 12660640 +
Cca Cca02g02205 Chr02 42566328 42568462 +
Dod Dod06g0847 Chr06 10530833 10532920 -
Gma Gma10g02184 Chr10 49436919 49438817 +
Gso Gso10g2053 Chr10 47552208 47554349 +
Lal Lal13g0060 Chr13 371103 373347 -
Lja Lja5g0676 Chr5 6083021 6084799 -
Mal Mal1g2111 Chr1 27611054 27612886 -
Mtr Mtr1g3694 Chr1 48618443 48620639 +
Psa Psa6g4460 Chr6 391401987 391404440 +
Ssu Ssu7g0841 Chr7 16897357 16900819 -
Tpr Tpr1g0810 Chr1 6767343 6769649 -
Tsu Tsu01g04363 Chr01 51524505 51526796 +
Vra Vra8g2190 Chr8 40290923 40293104 +
Vvi Vvi16g1025 Chr16 18545700 18546260 +
Aed Aed11g1749 Chr11 21016619 21017230 +
Cca Cca06g01825 Chr06 33677034 33678695 +
Ssu Ssu2g2901 Chr2 90334610 90335266 +
Vra Vra11g0251 Chr11 1725874 1726752 -
Vvi Vvi16g1026 Chr16 18554821 18556254 -
Bva Bva04g01202 Chr04 8217725 8219291 +
Gma Gma09g01219 Chr09 33463924 33465703 -
Gso Gso9g1052 Chr9 30340511 30342256 -
Vvi Vvi16g1027 Chr16 18582713 18583585 -
Ahy Ahy15g3617 Chr15 158932345 158934115 -
Aip Aip05g03932 Chr05 147534871 147536560 -
Vvi Vvi16g1028 Chr16 18585339 18586769 -
Ahy Ahy15g3618 Chr15 158943685 158945353 -
Aip Aip05g03933 Chr05 147544763 147546140 -
Gma Gma09g01205 Chr09 32928492 32929853 -
Gso Gso9g1041 Chr9 29790638 29792818 -