Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1025 ATGACAAGCGACACCGGATCAGTGCGCCGGAAGAAGAGCCTGAAGTGTCTAGCATATGTTGCTGCTTTTGTGGTGTTCCAAACTGGCATCATATTGCTCTTTGTTCTACTAGTCCTGAAGATCAGAGATCCTAAAGTCCGCATCGCCTCCATCTCTGTGGAGAATCAGCATTTCTCTACAAATTCCTTTAGCATGGACCTCAAGGCTCGAGTTACAGTCAAGAACACGAATTTCGGTCACTTCAAATTCGATAATAGTACTGCAACTATATCGTATTTTGGCACTGCAGTAGGGGAGGCAACTATTCTTAAGGCGAGGGCTAGATCAAGATCCACCAAAAGGTTTAACATAACTGTGCCCATATCTTCATCCAAGGTAAATAACCATCGACAATTGCGTAGGGATTTAAATTCTGGGGTTTTGAATCTGAGCAGCACTGCAAAGTTGAGTGGAAAGATACATCTGTTCAAGATTTTCAAGAAGAAGAAATCTGCAGAAATGAGTTGTACCATGGAGCTTCATACTAACACAAGCTCCATTGAGAACTTGAGCTGCAAGTGA 561 0.4278 MTSDTGSVRRKKSLKCLAYVAAFVVFQTGIILLFVLLVLKIRDPKVRIASISVENQHFSTNSFSMDLKARVTVKNTNFGHFKFDNSTATISYFGTAVGEATILKARARSRSTKRFNITVPISSSKVNNHRQLRRDLNSGVLNLSSTAKLSGKIHLFKIFKKKKSAEMSCTMELHTNTSSIENLSCK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1025 186 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 10 176 - -
Vvi16g1025 186 SUPERFAMILY LEA14-like 33 154 - -
Vvi16g1025 186 Gene3D - 36 174 - -
Vvi16g1025 186 Pfam Late embryogenesis abundant protein 70 170 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1025 Vvi-Chr16 18545700 18546260 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1025 - - vvi:104882184 341.273